RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MYCNOSP40205 109 aa18.7■□□□□ 0.58
SHMT1-206ENST00000579558 NDPQ00604 133 aa18.7■□□□□ 0.58
SHMT1-206ENST00000579558 PSG5Q15238 335 aa18.7■□□□□ 0.58
SHMT1-206ENST00000579558 ZNF660Q6AZW8 331 aaPredicted RBP18.7■□□□□ 0.58
SHMT1-206ENST00000579558 CROCCP3Q8IVE0 287 aa18.7■□□□□ 0.58
SHMT1-206ENST00000579558 MRPL41Q8IXM3 137 aaKnown RBP18.7■□□□□ 0.58
SHMT1-206ENST00000579558 FLYWCH2Q96CP2 140 aaKnown RBP18.7■□□□□ 0.58
SHMT1-206ENST00000579558 C5orf30Q96GV9 206 aa18.7■□□□□ 0.58
SHMT1-206ENST00000579558 RCC1LQ96I51 464 aaKnown RBP18.7■□□□□ 0.58
SHMT1-206ENST00000579558 SPATA2Q9UM82 520 aa18.7■□□□□ 0.58
SHMT1-206ENST00000579558 A0A0A6YYH2 397 aa18.69■□□□□ 0.58
SHMT1-206ENST00000579558 A6NJ64 397 aa18.69■□□□□ 0.58
SHMT1-206ENST00000579558 TRIM64CA6NLI5 447 aa18.69■□□□□ 0.58
SHMT1-206ENST00000579558 FCN1O00602 326 aa18.69■□□□□ 0.58
SHMT1-206ENST00000579558 SPDEFO95238 335 aa18.69■□□□□ 0.58
SHMT1-206ENST00000579558 PRB2P02812 416 aaPredicted RBP18.69■□□□□ 0.58
SHMT1-206ENST00000579558 CTXN2P0C2S0 81 aa18.69■□□□□ 0.58
SHMT1-206ENST00000579558 PPIFP30405 207 aaKnown RBP18.69■□□□□ 0.58
SHMT1-206ENST00000579558 CX3CL1P78423 397 aa18.69■□□□□ 0.58
SHMT1-206ENST00000579558 ABHD5Q8WTS1 349 aa18.69■□□□□ 0.58
SHMT1-206ENST00000579558 CLCC1Q96S66 551 aa18.69■□□□□ 0.58
SHMT1-206ENST00000579558 RPS19P39019 145 aaKnown RBP18.68■□□□□ 0.58
SHMT1-206ENST00000579558 CDX1P47902 265 aaPredicted RBP18.68■□□□□ 0.58
SHMT1-206ENST00000579558 ECSCRQ19T08 205 aa18.68■□□□□ 0.58
SHMT1-206ENST00000579558 CNIH2Q6PI25 160 aa18.68■□□□□ 0.58
SHMT1-206ENST00000579558 TMEM65Q6PI78 240 aa18.68■□□□□ 0.58
SHMT1-206ENST00000579558 DUX3Q96PT4 197 aa18.68■□□□□ 0.58
SHMT1-206ENST00000579558 DIABLOQ9NR28 239 aa18.68■□□□□ 0.58
SHMT1-206ENST00000579558 FBXO7Q9Y3I1 522 aa18.68■□□□□ 0.58
SHMT1-206ENST00000579558 J3QRK9 145 aa18.67■□□□□ 0.58
SHMT1-206ENST00000579558 DUS4LO95620 317 aaKnown RBP18.67■□□□□ 0.58
SHMT1-206ENST00000579558 NFYAP23511 347 aaPredicted RBP18.67■□□□□ 0.58
SHMT1-206ENST00000579558 CBX3Q13185 183 aa18.67■□□□□ 0.58
SHMT1-206ENST00000579558 FOXB2Q5VYV0 432 aa18.67■□□□□ 0.58
SHMT1-206ENST00000579558 RAX2Q96IS3 184 aa18.67■□□□□ 0.58
SHMT1-206ENST00000579558 P2RX4Q99571 388 aa18.67■□□□□ 0.58
SHMT1-206ENST00000579558 NECAP2Q9NVZ3 263 aa18.67■□□□□ 0.58
SHMT1-206ENST00000579558 ANXA10Q9UJ72 324 aa18.67■□□□□ 0.58
SHMT1-206ENST00000579558 A3GALT2U3KPV4 340 aa18.67■□□□□ 0.58
SHMT1-206ENST00000579558 CCL24O00175 119 aa18.66■□□□□ 0.58
SHMT1-206ENST00000579558 SLC25A17O43808 307 aa18.66■□□□□ 0.58
SHMT1-206ENST00000579558 CRIP2P52943 208 aaPredicted RBP18.66■□□□□ 0.58
SHMT1-206ENST00000579558 TAGLNQ01995 201 aaKnown RBP18.66■□□□□ 0.58
SHMT1-206ENST00000579558 DEFB136Q30KP8 78 aa18.66■□□□□ 0.58
SHMT1-206ENST00000579558 BVESQ8NE79 360 aa18.66■□□□□ 0.58
SHMT1-206ENST00000579558 ADTRPQ96IZ2 230 aa18.66■□□□□ 0.58
SHMT1-206ENST00000579558 KLK15Q9H2R5 256 aa18.66■□□□□ 0.58
SHMT1-206ENST00000579558 OR2W1Q9Y3N9 320 aa18.66■□□□□ 0.58
SHMT1-206ENST00000579558 CA2P00918 260 aa18.65■□□□□ 0.58
SHMT1-206ENST00000579558 IGLV1-40P01703 118 aa18.65■□□□□ 0.58
SHMT1-206ENST00000579558 LUMP51884 338 aaPredicted RBP18.65■□□□□ 0.58
SHMT1-206ENST00000579558 RTL8BQ17RB0 113 aa18.65■□□□□ 0.58
SHMT1-206ENST00000579558 REC114Q7Z4M0 266 aa18.65■□□□□ 0.58
SHMT1-206ENST00000579558 MINDY2Q8NBR6 621 aa18.65■□□□□ 0.58
SHMT1-206ENST00000579558 MYOZ3Q8TDC0 251 aa18.65■□□□□ 0.58
SHMT1-206ENST00000579558 C4orf3Q8WVX3 66 aa18.65■□□□□ 0.58
SHMT1-206ENST00000579558 HARBI1Q96MB7 349 aa18.65■□□□□ 0.58
SHMT1-206ENST00000579558 FUNDC2Q9BWH2 189 aa18.65■□□□□ 0.58
SHMT1-206ENST00000579558 AUNIPQ9H7T9 357 aa18.65■□□□□ 0.58
SHMT1-206ENST00000579558 TPSG1Q9NRR2 321 aa18.65■□□□□ 0.58
SHMT1-206ENST00000579558 A0A1W2PN81 502 aa18.64■□□□□ 0.57
SHMT1-206ENST00000579558 RRASP10301 218 aa18.64■□□□□ 0.57
SHMT1-206ENST00000579558 DUTP33316 252 aaKnown RBP18.64■□□□□ 0.57
SHMT1-206ENST00000579558 CHRNA7P36544 502 aa18.64■□□□□ 0.57
SHMT1-206ENST00000579558 LGALS7P47929 136 aa18.64■□□□□ 0.57
SHMT1-206ENST00000579558 RAB25P57735 213 aa18.64■□□□□ 0.57
SHMT1-206ENST00000579558 TMEM267Q0VDI3 215 aaPredicted RBP18.64■□□□□ 0.57
SHMT1-206ENST00000579558 C19orf54Q5BKX5 351 aa18.64■□□□□ 0.57
SHMT1-206ENST00000579558 ZNF562Q6V9R5 426 aa18.64■□□□□ 0.57
SHMT1-206ENST00000579558 PPP1R27Q86WC6 154 aa18.64■□□□□ 0.57
SHMT1-206ENST00000579558 ZNF645Q8N7E2 425 aa18.64■□□□□ 0.57
SHMT1-206ENST00000579558 GVQW1Q8N7I0 195 aa18.64■□□□□ 0.57
SHMT1-206ENST00000579558 BEST4Q8NFU0 473 aa18.64■□□□□ 0.57
SHMT1-206ENST00000579558 FAM103A1Q9BTL3 118 aaKnown RBP18.64■□□□□ 0.57
SHMT1-206ENST00000579558 FOXA2Q9Y261 457 aaPredicted RBP18.64■□□□□ 0.57
SHMT1-206ENST00000579558 SHOXO15266 292 aa18.63■□□□□ 0.57
SHMT1-206ENST00000579558 IGLV2-23P01705 113 aa18.63■□□□□ 0.57
SHMT1-206ENST00000579558 HLA-DQB1P01920 261 aa18.63■□□□□ 0.57
SHMT1-206ENST00000579558 EGR2P11161 476 aaPredicted RBP18.63■□□□□ 0.57
SHMT1-206ENST00000579558 ARPC4P59998 168 aa18.63■□□□□ 0.57
SHMT1-206ENST00000579558 TMEM177Q53S58 311 aa18.63■□□□□ 0.57
SHMT1-206ENST00000579558 UBE2NLQ5JXB2 153 aa18.63■□□□□ 0.57
SHMT1-206ENST00000579558 TCTEX1D1Q8N7M0 179 aa18.63■□□□□ 0.57
SHMT1-206ENST00000579558 DDB2Q92466 427 aa18.63■□□□□ 0.57
SHMT1-206ENST00000579558 S100A16Q96FQ6 103 aaKnown RBP18.63■□□□□ 0.57
SHMT1-206ENST00000579558 GPR61Q9BZJ8 451 aa18.63■□□□□ 0.57
SHMT1-206ENST00000579558 NUBP2Q9Y5Y2 271 aa18.63■□□□□ 0.57
SHMT1-206ENST00000579558 LINC00473A8K010 186 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 PTHLHP12272 177 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 RAB9AP51151 201 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 NCS1P62166 190 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 UNQ5815/PRO19632Q6UWF5 114 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 HOGA1Q86XE5 327 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 SAMD12Q8N8I0 201 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 ZNF491Q8N8L2 437 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 OR13F1Q8NGS4 319 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 ARPC1AQ92747 370 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 UBE2E2Q96LR5 201 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 MCRIP2Q9BUT9 160 aaKnown RBP18.62■□□□□ 0.57
SHMT1-206ENST00000579558 AURKAIP1Q9NWT8 199 aaPredicted RBP18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms