RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 FAM19A5Q7Z5A7 132 aaPredicted RBP4.1□□□□□ -1.75
VPS53-219ENST00000576019 PRSS58Q8IYP2 241 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 CEND1Q8N111 149 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 OR5B17Q8NGF7 314 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 PPCDCQ96CD2 204 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 TMEM101Q96IK0 257 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 PRAP1Q96NZ9 151 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 EMC6Q9BV81 110 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 TPK1Q9H3S4 243 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 PLAC8L1A1L4L8 177 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 NDUFC2-KCTD14E9PQ53 114 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 TAAR5O14804 337 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 SERPINB7O75635 380 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 HLA-DPB1P04440 258 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 RPSAP08865 295 aaKnown RBP4.09□□□□□ -1.75
VPS53-219ENST00000576019 CRYGSP22914 178 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 SSTR5P35346 364 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 POLR2IP36954 125 aaKnown RBP4.09□□□□□ -1.75
VPS53-219ENST00000576019 PMELP40967 661 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 TCL1AP56279 114 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 HERVK_113P61574 105 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 FAM3AP98173 230 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 IFITM3Q01628 133 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 PPIDQ08752 370 aaKnown RBP4.09□□□□□ -1.75
VPS53-219ENST00000576019 PPP1R1AQ13522 171 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 FAM53BQ14153 422 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 KIAA0040Q15053 153 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 ORMDL2Q53FV1 153 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 LAMTOR1Q6IAA8 161 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 ZNF497Q6ZNH5 498 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 DGAT2L6Q6ZPD8 337 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 S100A7AQ86SG5 101 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 GHSRQ92847 366 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 TLCD1Q96CP7 247 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 TIMM17AQ99595 171 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 SFXN3Q9BWM7 321 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 SUCNR1Q9BXA5 334 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 UBXN6Q9BZV1 441 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 SLC22A4Q9H015 551 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 OR51E2Q9H255 320 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 SLC2A9Q9NRM0 540 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 ENPP4Q9Y6X5 453 aa4.09□□□□□ -1.75
VPS53-219ENST00000576019 IGHV3-74A0A0B4J1X5 117 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 H3BP45 60 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 DNASE2O00115 360 aaPredicted RBP4.08□□□□□ -1.76
VPS53-219ENST00000576019 PHYHO14832 338 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 ACOX3O15254 700 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 IGLV2-23P01705 113 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 HLA-DRAP01903 254 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 UQCRHP07919 91 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 P0C879 139 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 SPNP16150 400 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 ATF1P18846 271 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 GABRR1P24046 479 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 PYCR1P32322 319 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 DCDP81605 110 aaKnown RBP4.08□□□□□ -1.76
VPS53-219ENST00000576019 SNCBQ16143 134 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 OPN5Q6U736 354 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 ZNF485Q8NCK3 441 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 OR4C13Q8NGP0 309 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 HAVCR2Q8TDQ0 301 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 CCL17Q92583 94 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 SMIM12Q96EX1 92 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 SMIM8Q96KF7 97 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 C1orf147Q96MC9 270 aaPredicted RBP4.08□□□□□ -1.76
VPS53-219ENST00000576019 DHRS9Q9BPW9 319 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 SAMD10Q9BYL1 202 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 PARP12Q9H0J9 701 aaKnown RBP4.08□□□□□ -1.76
VPS53-219ENST00000576019 DHCR7Q9UBM7 475 aaKnown RBP4.08□□□□□ -1.76
VPS53-219ENST00000576019 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.08□□□□□ -1.76
VPS53-219ENST00000576019 MYCBP2O75592 4640 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 FAT2Q9NYQ8 4349 aa4.08□□□□□ -1.76
VPS53-219ENST00000576019 KIAA1549Q9HCM3 1950 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 TRAV8-2A0A0B4J237 113 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 ZFP92A6NM28 416 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 OR5K4A6NMS3 321 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 M0R1X1 148 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 MANBAO00462 879 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 STX10O60499 249 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 FOXH1O75593 365 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 IFNA16P05015 189 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 PRPS1L1P21108 318 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 MDKP21741 143 aaPredicted RBP4.07□□□□□ -1.76
VPS53-219ENST00000576019 RPL12P30050 165 aaKnown RBP4.07□□□□□ -1.76
VPS53-219ENST00000576019 PRSS3P35030 304 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 RCVRNP35243 200 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 CRADDP78560 199 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 PDK2Q15119 407 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 TMED2Q15363 201 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 SNRNP35Q16560 246 aaKnown RBP4.07□□□□□ -1.76
VPS53-219ENST00000576019 TMEM183BQ1AE95 376 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 TMEM176BQ3YBM2 270 aaPredicted RBP4.07□□□□□ -1.76
VPS53-219ENST00000576019 PYCR3Q53H96 274 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 SAXO2Q658L1 398 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 SPINK14Q6IE38 97 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 SPOPLQ6IQ16 392 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 LYPD2Q6UXB3 125 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 C11orf53Q8IXP5 236 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 TMEM183AQ8IXX5 376 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 C14orf178Q8N769 122 aaPredicted RBP4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms