RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 SLITRK2Q9H156 845 aa3.01□□□□□ -1.93
NUP88-202ENST00000570937 ELL3Q9HB65 397 aaPredicted RBP3.01□□□□□ -1.93
NUP88-202ENST00000570937 HES4Q9HCC6 221 aa3.01□□□□□ -1.93
NUP88-202ENST00000570937 EXOSC4Q9NPD3 245 aaKnown RBP3.01□□□□□ -1.93
NUP88-202ENST00000570937 MTCH1Q9NZJ7 389 aa3.01□□□□□ -1.93
NUP88-202ENST00000570937 CLEC2DQ9UHP7 191 aa3.01□□□□□ -1.93
NUP88-202ENST00000570937 RAB26Q9ULW5 256 aa3.01□□□□□ -1.93
NUP88-202ENST00000570937 SPATA2Q9UM82 520 aa3.01□□□□□ -1.93
NUP88-202ENST00000570937 ZNF469Q96JG9 3925 aaPredicted RBP3.01□□□□□ -1.93
NUP88-202ENST00000570937 NSD1Q96L73 2696 aaPredicted RBP3.01□□□□□ -1.93
NUP88-202ENST00000570937 C2CD3Q4AC94 2353 aa3.01□□□□□ -1.93
NUP88-202ENST00000570937 CHD3Q12873 2000 aaKnown RBP3□□□□□ -1.93
NUP88-202ENST00000570937 TANC2Q9HCD6 1990 aa3□□□□□ -1.93
NUP88-202ENST00000570937 IGKV1-27A0A075B6S5 117 aa3□□□□□ -1.93
NUP88-202ENST00000570937 TRGV10A0A0A0MS01 117 aa3□□□□□ -1.93
NUP88-202ENST00000570937 TRAV40A0A0B4J280 105 aa3□□□□□ -1.93
NUP88-202ENST00000570937 IGKV1-9A0A0C4DH69 117 aa3□□□□□ -1.93
NUP88-202ENST00000570937 CENPVL3A0A0U1RRI6 287 aa3□□□□□ -1.93
NUP88-202ENST00000570937 CLDN34H7C241 214 aa3□□□□□ -1.93
NUP88-202ENST00000570937 MRPS14O60783 128 aaKnown RBP3□□□□□ -1.93
NUP88-202ENST00000570937 GPX5O75715 221 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ARL6IP5O75915 188 aa3□□□□□ -1.93
NUP88-202ENST00000570937 HAND1O96004 215 aa3□□□□□ -1.93
NUP88-202ENST00000570937 RBP4P02753 201 aa3□□□□□ -1.93
NUP88-202ENST00000570937 CRYBA1P05813 215 aa3□□□□□ -1.93
NUP88-202ENST00000570937 FBP1P09467 338 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ZNF728P0DKX0 622 aa3□□□□□ -1.93
NUP88-202ENST00000570937 GTF2F2P13984 249 aa3□□□□□ -1.93
NUP88-202ENST00000570937 PRKACAP17612 351 aa3□□□□□ -1.93
NUP88-202ENST00000570937 GABRR1P24046 479 aa3□□□□□ -1.93
NUP88-202ENST00000570937 PRTN3P24158 256 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ERP29P30040 261 aaKnown RBP3□□□□□ -1.93
NUP88-202ENST00000570937 TGFBR2P37173 567 aa3□□□□□ -1.93
NUP88-202ENST00000570937 PTGFRP43088 359 aa3□□□□□ -1.93
NUP88-202ENST00000570937 OR3A1P47881 315 aa3□□□□□ -1.93
NUP88-202ENST00000570937 KCNJ3P48549 501 aa3□□□□□ -1.93
NUP88-202ENST00000570937 UBE2E1P51965 193 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ARHGDIBP52566 201 aa3□□□□□ -1.93
NUP88-202ENST00000570937 EDDM3BP56851 147 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ACTG1P63261 375 aa3□□□□□ -1.93
NUP88-202ENST00000570937 SLC35A2P78381 396 aa3□□□□□ -1.93
NUP88-202ENST00000570937 SCN1BQ07699 218 aa3□□□□□ -1.93
NUP88-202ENST00000570937 GRK1Q15835 563 aa3□□□□□ -1.93
NUP88-202ENST00000570937 DGUOKQ16854 277 aa3□□□□□ -1.93
NUP88-202ENST00000570937 DDI2Q5TDH0 399 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ELP2Q6IA86 826 aa3□□□□□ -1.93
NUP88-202ENST00000570937 OR52W1Q6IF63 320 aa3□□□□□ -1.93
NUP88-202ENST00000570937 TRAT1Q6PIZ9 186 aa3□□□□□ -1.93
NUP88-202ENST00000570937 VMO1Q7Z5L0 202 aa3□□□□□ -1.93
NUP88-202ENST00000570937 TRAPPC6BQ86SZ2 158 aa3□□□□□ -1.93
NUP88-202ENST00000570937 LINC00596Q86U02 117 aa3□□□□□ -1.93
NUP88-202ENST00000570937 TMEM86BQ8N661 226 aa3□□□□□ -1.93
NUP88-202ENST00000570937 CD177Q8N6Q3 437 aa3□□□□□ -1.93
NUP88-202ENST00000570937 SIGLECL1Q8N7X8 197 aa3□□□□□ -1.93
NUP88-202ENST00000570937 PXT1Q8NFP0 134 aa3□□□□□ -1.93
NUP88-202ENST00000570937 OR51A4Q8NGJ6 313 aa3□□□□□ -1.93
NUP88-202ENST00000570937 OR51A2Q8NGJ7 313 aa3□□□□□ -1.93
NUP88-202ENST00000570937 OR13D1Q8NGV5 346 aa3□□□□□ -1.93
NUP88-202ENST00000570937 TNFAIP8L1Q8WVP5 186 aa3□□□□□ -1.93
NUP88-202ENST00000570937 C22orf15Q8WYQ4 148 aa3□□□□□ -1.93
NUP88-202ENST00000570937 PHYHIPQ92561 330 aa3□□□□□ -1.93
NUP88-202ENST00000570937 UFD1Q92890 307 aa3□□□□□ -1.93
NUP88-202ENST00000570937 LHX4Q969G2 390 aa3□□□□□ -1.93
NUP88-202ENST00000570937 CREB3L1Q96BA8 519 aa3□□□□□ -1.93
NUP88-202ENST00000570937 SEH1LQ96EE3 360 aa3□□□□□ -1.93
NUP88-202ENST00000570937 MRPS24Q96EL2 167 aaKnown RBP3□□□□□ -1.93
NUP88-202ENST00000570937 CNBD2Q96M20 576 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ZNF488Q96MN9 340 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ZNF714Q96N38 554 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ZNF184Q99676 751 aaPredicted RBP3□□□□□ -1.93
NUP88-202ENST00000570937 SLC6A7Q99884 636 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ZNF649Q9BS31 505 aa3□□□□□ -1.93
NUP88-202ENST00000570937 C19orf24Q9BVV8 132 aa3□□□□□ -1.93
NUP88-202ENST00000570937 YTHDF1Q9BYJ9 559 aaKnown RBP3□□□□□ -1.93
NUP88-202ENST00000570937 CCDC90BQ9GZT6 254 aa3□□□□□ -1.93
NUP88-202ENST00000570937 FGF23Q9GZV9 251 aaPredicted RBP3□□□□□ -1.93
NUP88-202ENST00000570937 SIRPDQ9H106 197 aa3□□□□□ -1.93
NUP88-202ENST00000570937 CST11Q9H112 138 aa3□□□□□ -1.93
NUP88-202ENST00000570937 METTL9Q9H1A3 318 aa3□□□□□ -1.93
NUP88-202ENST00000570937 GAL3ST2Q9H3Q3 398 aa3□□□□□ -1.93
NUP88-202ENST00000570937 DUSP21Q9H596 190 aa3□□□□□ -1.93
NUP88-202ENST00000570937 SPACA1Q9HBV2 294 aa3□□□□□ -1.93
NUP88-202ENST00000570937 HMG20AQ9NP66 347 aa3□□□□□ -1.93
NUP88-202ENST00000570937 RAB9BQ9NP90 201 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ACOT13Q9NPJ3 140 aa3□□□□□ -1.93
NUP88-202ENST00000570937 RBFOX1Q9NWB1 397 aaKnown RBP3□□□□□ -1.93
NUP88-202ENST00000570937 FKBP14Q9NWM8 211 aa3□□□□□ -1.93
NUP88-202ENST00000570937 CLEC5AQ9NY25 188 aa3□□□□□ -1.93
NUP88-202ENST00000570937 TAS2R4Q9NYW5 299 aa3□□□□□ -1.93
NUP88-202ENST00000570937 THYN1Q9P016 225 aa3□□□□□ -1.93
NUP88-202ENST00000570937 GHRLQ9UBU3 117 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ZNF222Q9UK12 451 aa3□□□□□ -1.93
NUP88-202ENST00000570937 ING4Q9UNL4 249 aa3□□□□□ -1.93
NUP88-202ENST00000570937 FOXJ3Q9UPW0 622 aa3□□□□□ -1.93
NUP88-202ENST00000570937 GSTK1Q9Y2Q3 226 aa3□□□□□ -1.93
NUP88-202ENST00000570937 MAB21L2Q9Y586 359 aa3□□□□□ -1.93
NUP88-202ENST00000570937 POMT1Q9Y6A1 747 aa3□□□□□ -1.93
NUP88-202ENST00000570937 FN1P02751 2386 aaKnown RBP3□□□□□ -1.93
NUP88-202ENST00000570937 YLPM1P49750 1951 aaKnown RBP3□□□□□ -1.93
NUP88-202ENST00000570937 TLN2Q9Y4G6 2542 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms