RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 SLC25A17O43808 307 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 LGALS7P47929 136 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 VEGFCP49767 419 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 PSMD7P51665 324 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 TAGLNQ01995 201 aaKnown RBP12.95□□□□□ -0.34
CLN3-231ENST00000568422 POC5Q8NA72 575 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 OR4A4PQ8NGN8 299 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 GFI1Q99684 422 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 PECRQ9BY49 303 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 ZNF355PQ9NSJ1 428 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 RDH8Q9NYR8 311 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 TPRKBQ9Y3C4 175 aa12.95□□□□□ -0.34
CLN3-231ENST00000568422 IGKV1-6A0A0C4DH72 117 aa12.94□□□□□ -0.34
CLN3-231ENST00000568422 CNIH1O95406 144 aa12.94□□□□□ -0.34
CLN3-231ENST00000568422 BRI3O95415 125 aa12.94□□□□□ -0.34
CLN3-231ENST00000568422 DIRAS3O95661 229 aa12.94□□□□□ -0.34
CLN3-231ENST00000568422 MRPS15P82914 257 aaKnown RBP12.94□□□□□ -0.34
CLN3-231ENST00000568422 ANKRD13BQ86YJ7 626 aa12.94□□□□□ -0.34
CLN3-231ENST00000568422 GRPEL2Q8TAA5 225 aa12.94□□□□□ -0.34
CLN3-231ENST00000568422 FAM3DQ96BQ1 224 aa12.94□□□□□ -0.34
CLN3-231ENST00000568422 AK6Q9Y3D8 172 aaKnown RBP12.94□□□□□ -0.34
CLN3-231ENST00000568422 TRIM64CA6NLI5 447 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 A8MZ25 164 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 M0R1X1 148 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 DENRO43583 198 aaKnown RBP12.93□□□□□ -0.34
CLN3-231ENST00000568422 IGLV1-51P01701 117 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 HSMCR30P0CW71 290 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 LINC00205P59089 165 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 MLLT11Q13015 90 aaPredicted RBP12.93□□□□□ -0.34
CLN3-231ENST00000568422 CBX3Q13185 183 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 C2orf76Q3KRA6 126 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 PLAC9Q5JTB6 97 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 DUSP21Q9H596 190 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 SLC35D1Q9NTN3 355 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 RAB22AQ9UL26 194 aa12.93□□□□□ -0.34
CLN3-231ENST00000568422 LDLRAD4O15165 306 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 FABP7O15540 132 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 CD3GP09693 182 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 LYL1P12980 280 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 AADACP22760 399 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 CALRP27797 417 aaKnown RBP12.92□□□□□ -0.34
CLN3-231ENST00000568422 RPS25P62851 125 aaKnown RBP12.92□□□□□ -0.34
CLN3-231ENST00000568422 SRSF7Q16629 238 aaKnown RBP eCLIP12.92□□□□□ -0.34
CLN3-231ENST00000568422 OR5T1Q8NG75 326 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 OR10J5Q8NHC4 309 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 CITED4Q96RK1 184 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 TM2D3Q9BRN9 247 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 CENPOQ9BU64 300 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 ACOT13Q9NPJ3 140 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 V9GY05 133 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 DNAH7Q8WXX0 4024 aa12.92□□□□□ -0.34
CLN3-231ENST00000568422 RGS10O43665 173 aa12.91□□□□□ -0.34
CLN3-231ENST00000568422 IGLV2-23P01705 113 aa12.91□□□□□ -0.34
CLN3-231ENST00000568422 CRYGBP07316 175 aa12.91□□□□□ -0.34
CLN3-231ENST00000568422 RRASP10301 218 aa12.91□□□□□ -0.34
CLN3-231ENST00000568422 CLDN12P56749 244 aa12.91□□□□□ -0.34
CLN3-231ENST00000568422 KLF5Q13887 457 aaPredicted RBP12.91□□□□□ -0.34
CLN3-231ENST00000568422 SGPP2Q8IWX5 399 aa12.91□□□□□ -0.34
CLN3-231ENST00000568422 Q8N1Y9 231 aa12.91□□□□□ -0.34
CLN3-231ENST00000568422 RAB3CQ96E17 227 aa12.91□□□□□ -0.34
CLN3-231ENST00000568422 CABLES2Q9BTV7 478 aa12.91□□□□□ -0.34
CLN3-231ENST00000568422 RSRP1Q9BUV0 290 aa12.91□□□□□ -0.34
CLN3-231ENST00000568422 OR2D2Q9H210 308 aa12.91□□□□□ -0.34
CLN3-231ENST00000568422 TRBV6-7A0A0A0MS04 114 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 H0Y980 276 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 IGHV4-30-4P0DP06 118 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 SNRPBP14678 240 aaKnown RBP12.9□□□□□ -0.34
CLN3-231ENST00000568422 SSBP2P81877 361 aaPredicted RBP12.9□□□□□ -0.34
CLN3-231ENST00000568422 TATDN3Q17R31 274 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 RTL8BQ17RB0 113 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 TMEM177Q53S58 311 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 USMG5Q96IX5 58 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 HARBI1Q96MB7 349 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 MGLLQ99685 303 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 PALMDQ9NP74 551 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 C19orf73Q9NVV2 129 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 SDHAF2Q9NX18 166 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 KCNK7Q9Y2U2 307 aa12.9□□□□□ -0.34
CLN3-231ENST00000568422 TMEM272A0A1B0GTI8 110 aa12.89□□□□□ -0.35
CLN3-231ENST00000568422 BET1O15155 118 aa12.89□□□□□ -0.35
CLN3-231ENST00000568422 SHOXO15266 292 aa12.89□□□□□ -0.35
CLN3-231ENST00000568422 FCGR3AP08637 254 aa12.89□□□□□ -0.35
CLN3-231ENST00000568422 GADD45AP24522 165 aa12.89□□□□□ -0.35
CLN3-231ENST00000568422 FABP5Q01469 135 aa12.89□□□□□ -0.35
CLN3-231ENST00000568422 PJVKQ0ZLH3 352 aa12.89□□□□□ -0.35
CLN3-231ENST00000568422 IGSF11Q5DX21 431 aa12.89□□□□□ -0.35
CLN3-231ENST00000568422 PRSS48Q7RTY5 328 aa12.89□□□□□ -0.35
CLN3-231ENST00000568422 OR9G4Q8NGQ1 327 aa12.89□□□□□ -0.35
CLN3-231ENST00000568422 ADTRPQ96IZ2 230 aa12.89□□□□□ -0.35
CLN3-231ENST00000568422 TINAGL1Q9GZM7 467 aaPredicted RBP12.89□□□□□ -0.35
CLN3-231ENST00000568422 ANKRD34BA5PLL1 514 aa12.88□□□□□ -0.35
CLN3-231ENST00000568422 PDCD5O14737 125 aa12.88□□□□□ -0.35
CLN3-231ENST00000568422 GSTT2P0CG29 244 aa12.88□□□□□ -0.35
CLN3-231ENST00000568422 GSTT2BP0CG30 244 aa12.88□□□□□ -0.35
CLN3-231ENST00000568422 ZNF343Q6P1L6 599 aa12.88□□□□□ -0.35
CLN3-231ENST00000568422 TEX45Q8NA69 505 aa12.88□□□□□ -0.35
CLN3-231ENST00000568422 OR10R2Q8NGX6 335 aa12.88□□□□□ -0.35
CLN3-231ENST00000568422 CCDC90BQ9GZT6 254 aa12.88□□□□□ -0.35
CLN3-231ENST00000568422 SIGLEC8Q9NYZ4 499 aa12.88□□□□□ -0.35
CLN3-231ENST00000568422 PEF1Q9UBV8 284 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms