RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 NGFP01138 241 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 TRGC1P0CF51 173 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 ARR3P36575 388 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 USF2Q15853 346 aaPredicted RBP11.18□□□□□ -0.62
VPS4A-204ENST00000566354 LRRC75BQ2VPJ9 315 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 LCN15Q6UWW0 184 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 C1orf122Q6ZSJ8 110 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 MRGPRGQ86SM5 289 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 ZNF525Q8N782 197 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 ZNF71Q9NQZ8 489 aaPredicted RBP11.18□□□□□ -0.62
VPS4A-204ENST00000566354 VAX2Q9UIW0 290 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 MPC1Q9Y5U8 109 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 RP1L1Q8IWN7 2480 aaPredicted RBP11.18□□□□□ -0.62
VPS4A-204ENST00000566354 FREM1Q5H8C1 2179 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 GTF3C1Q12789 2109 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 OR5B21A6NL26 309 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 ANKRD30BLA7E2S9 258 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 NXPH2O95156 264 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 SOD3P08294 240 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 GNG3P63215 75 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 ZNF726P1Q15940 193 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 UNQ6494/PRO21346Q6UXR6 183 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 MCEMP1Q8IX19 187 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 ABHD5Q8WTS1 349 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 PINX1Q96BK5 328 aaKnown RBP11.18□□□□□ -0.62
VPS4A-204ENST00000566354 RCC1LQ96I51 464 aaKnown RBP11.18□□□□□ -0.62
VPS4A-204ENST00000566354 POM121L2Q96KW2 1035 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 PARD6GQ9BYG4 376 aaPredicted RBP11.18□□□□□ -0.62
VPS4A-204ENST00000566354 CTDSP1Q9GZU7 261 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 VSIRQ9H7M9 311 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 SPTA1P02549 2419 aa11.18□□□□□ -0.62
VPS4A-204ENST00000566354 TRBV24-1A0A075B6N3 115 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-204ENST00000566354 IFNA1P01562 189 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 IGKV1-39P01597 117 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 IGHG3P01860 377 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 IGKV1D-39P04432 117 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 FAM87AP0C7U9 286 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 ZNF25P17030 456 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-204ENST00000566354 MDH2P40926 338 aaKnown RBP11.17□□□□□ -0.62
VPS4A-204ENST00000566354 UCNP55089 124 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 PMS2P11Q13670 270 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 IZUMO4Q1ZYL8 232 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 TUSC5Q8IXB3 177 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 IL1F10Q8WWZ1 152 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 FRZBQ92765 325 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 WDYHV1Q96HA8 205 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 ZNF488Q96MN9 340 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 OR14J1Q9UGF5 321 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 ATRXP46100 2492 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 NBEAQ8NFP9 2946 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 ZNF503-AS2A6NEH8 195 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 OR5H1A6NKK0 313 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 IGLV2-14P01704 120 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 RD3LP0DJH9 198 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 PLP2Q04941 152 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 ARL16Q0P5N6 197 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 TMEM41BQ5BJD5 291 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 GFI1BQ5VTD9 330 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 PKIBQ9C010 78 aa11.17□□□□□ -0.62
VPS4A-204ENST00000566354 IGKV1-5P01602 117 aa11.16□□□□□ -0.62
VPS4A-204ENST00000566354 IAPPP10997 89 aa11.16□□□□□ -0.62
VPS4A-204ENST00000566354 MOB1BQ7L9L4 216 aa11.16□□□□□ -0.62
VPS4A-204ENST00000566354 TMEM208Q9BTX3 173 aa11.16□□□□□ -0.62
VPS4A-204ENST00000566354 LIN7CQ9NUP9 197 aaKnown RBP11.16□□□□□ -0.62
VPS4A-204ENST00000566354 OR1A1Q9P1Q5 309 aa11.16□□□□□ -0.62
VPS4A-204ENST00000566354 ITPR1Q14643 2758 aa11.16□□□□□ -0.62
VPS4A-204ENST00000566354 A8MWP6 167 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 SYNGR4O95473 234 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 APLNRP35414 380 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 FGF8P55075 233 aaPredicted RBP11.15□□□□□ -0.62
VPS4A-204ENST00000566354 FOXG1P55316 489 aaPredicted RBP11.15□□□□□ -0.62
VPS4A-204ENST00000566354 TESK1Q15569 626 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 HAPLN4Q86UW8 402 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 MED12LQ86YW9 2145 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 GCNT2Q8N0V5 402 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 ZCCHC14Q8WYQ9 949 aaKnown RBP11.15□□□□□ -0.62
VPS4A-204ENST00000566354 CORO2AQ92828 525 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 WDR61Q9GZS3 305 aaKnown RBP11.15□□□□□ -0.62
VPS4A-204ENST00000566354 MAP1LC3B2A6NCE7 125 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 CEBPZOSA8MTT3 80 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 PPBPP02775 128 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 SSX7Q7RTT5 188 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 APH1AQ96BI3 265 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 PCGF1Q9BSM1 259 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 MAP1LC3BQ9GZQ8 125 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 OR51I2Q9H344 312 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 PPP1R3CQ9UQK1 317 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 RBM7Q9Y580 266 aaKnown RBP11.15□□□□□ -0.62
VPS4A-204ENST00000566354 ACACBO00763 2458 aa11.15□□□□□ -0.62
VPS4A-204ENST00000566354 DOCK7Q96N67 2140 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 AHRRA9YTQ3 701 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 FAM90A26D6RGX4 464 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 PHOX2AO14813 284 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 IDH3GP51553 393 aaPredicted RBP11.14□□□□□ -0.63
VPS4A-204ENST00000566354 ZNF585BQ52M93 769 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 PDZD11Q5EBL8 140 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 WDR25Q64LD2 544 aaPredicted RBP11.14□□□□□ -0.63
VPS4A-204ENST00000566354 CDPF1Q6NVV7 123 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 C17orf78Q8N4C9 275 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms