RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 OR4A4PQ8NGN8 299 aa14.43□□□□□ -0.1
CLN3-218ENST00000565688 ELOVL1Q9BW60 279 aa14.43□□□□□ -0.1
CLN3-218ENST00000565688 ACOT13Q9NPJ3 140 aa14.43□□□□□ -0.1
CLN3-218ENST00000565688 H3BUA1 57 aa14.42□□□□□ -0.1
CLN3-218ENST00000565688 M0R1X1 148 aa14.42□□□□□ -0.1
CLN3-218ENST00000565688 SLC25A17O43808 307 aa14.42□□□□□ -0.1
CLN3-218ENST00000565688 TRGV3P03979 118 aa14.42□□□□□ -0.1
CLN3-218ENST00000565688 LGALS7P47929 136 aa14.42□□□□□ -0.1
CLN3-218ENST00000565688 AQP4P55087 323 aa14.42□□□□□ -0.1
CLN3-218ENST00000565688 CLDN12P56749 244 aa14.42□□□□□ -0.1
CLN3-218ENST00000565688 PLAC9Q5JTB6 97 aa14.42□□□□□ -0.1
CLN3-218ENST00000565688 GRPEL2Q8TAA5 225 aa14.42□□□□□ -0.1
CLN3-218ENST00000565688 RAB22AQ9UL26 194 aa14.42□□□□□ -0.1
CLN3-218ENST00000565688 V9GY05 133 aa14.42□□□□□ -0.1
CLN3-218ENST00000565688 LDLRAD4O15165 306 aa14.41□□□□□ -0.1
CLN3-218ENST00000565688 CNIH1O95406 144 aa14.41□□□□□ -0.1
CLN3-218ENST00000565688 DIRAS3O95661 229 aa14.41□□□□□ -0.1
CLN3-218ENST00000565688 CD3GP09693 182 aa14.41□□□□□ -0.1
CLN3-218ENST00000565688 FABP5Q01469 135 aa14.41□□□□□ -0.1
CLN3-218ENST00000565688 TAGLNQ01995 201 aaKnown RBP14.41□□□□□ -0.1
CLN3-218ENST00000565688 PRSS48Q7RTY5 328 aa14.41□□□□□ -0.1
CLN3-218ENST00000565688 SBSPONQ8IVN8 264 aa14.41□□□□□ -0.1
CLN3-218ENST00000565688 POC5Q8NA72 575 aa14.41□□□□□ -0.1
CLN3-218ENST00000565688 MGLLQ99685 303 aa14.41□□□□□ -0.1
CLN3-218ENST00000565688 CCDC90BQ9GZT6 254 aa14.41□□□□□ -0.1
CLN3-218ENST00000565688 RANGRFQ9HD47 186 aaPredicted RBP14.41□□□□□ -0.1
CLN3-218ENST00000565688 SLC35D1Q9NTN3 355 aa14.41□□□□□ -0.1
CLN3-218ENST00000565688 NKX1-2Q9UD57 310 aaPredicted RBP14.41□□□□□ -0.1
CLN3-218ENST00000565688 A0A0G2JLM5 398 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 TMEM272A0A1B0GTI8 110 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 C13orf42A0A1B0GVH6 325 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 FABP7O15540 132 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 FRMD6-AS1P0C7T7 363 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 ZP3P21754 424 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 LINC00205P59089 165 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 CBX3Q13185 183 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 MOGAT2Q3SYC2 334 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 OR10J5Q8NHC4 309 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 RAB3CQ96E17 227 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 TMEM68Q96MH6 324 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 RCHY1Q96PM5 261 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 ZNF355PQ9NSJ1 428 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 STUB1Q9UNE7 303 aa14.4□□□□□ -0.1
CLN3-218ENST00000565688 PDCD5O14737 125 aa14.39□□□□□ -0.11
CLN3-218ENST00000565688 BET1O15155 118 aa14.39□□□□□ -0.11
CLN3-218ENST00000565688 CRHBPP24387 322 aa14.39□□□□□ -0.11
CLN3-218ENST00000565688 OVCH2Q7RTZ1 564 aa14.39□□□□□ -0.11
CLN3-218ENST00000565688 NRG4Q8WWG1 115 aa14.39□□□□□ -0.11
CLN3-218ENST00000565688 CABLES2Q9BTV7 478 aa14.39□□□□□ -0.11
CLN3-218ENST00000565688 CENPOQ9BU64 300 aa14.39□□□□□ -0.11
CLN3-218ENST00000565688 OR2D2Q9H210 308 aa14.39□□□□□ -0.11
CLN3-218ENST00000565688 TRBV6-7A0A0A0MS04 114 aa14.38□□□□□ -0.11
CLN3-218ENST00000565688 IGLV2-23P01705 113 aa14.38□□□□□ -0.11
CLN3-218ENST00000565688 FCGR3AP08637 254 aa14.38□□□□□ -0.11
CLN3-218ENST00000565688 GADD45AP24522 165 aa14.38□□□□□ -0.11
CLN3-218ENST00000565688 RTL8BQ17RB0 113 aa14.38□□□□□ -0.11
CLN3-218ENST00000565688 HES5Q5TA89 166 aa14.38□□□□□ -0.11
CLN3-218ENST00000565688 ANKRD13BQ86YJ7 626 aa14.38□□□□□ -0.11
CLN3-218ENST00000565688 MUC7Q8TAX7 377 aa14.38□□□□□ -0.11
CLN3-218ENST00000565688 ZMAT4Q9H898 229 aa14.38□□□□□ -0.11
CLN3-218ENST00000565688 SDHAF2Q9NX18 166 aa14.38□□□□□ -0.11
CLN3-218ENST00000565688 KCNK7Q9Y2U2 307 aa14.38□□□□□ -0.11
CLN3-218ENST00000565688 TRAV1-2A0A0B4J238 106 aa14.37□□□□□ -0.11
CLN3-218ENST00000565688 TRIM64CA6NLI5 447 aa14.37□□□□□ -0.11
CLN3-218ENST00000565688 ANKRD65E5RJM6 399 aa14.37□□□□□ -0.11
CLN3-218ENST00000565688 BRI3O95415 125 aa14.37□□□□□ -0.11
CLN3-218ENST00000565688 CRYGBP07316 175 aa14.37□□□□□ -0.11
CLN3-218ENST00000565688 RRASP10301 218 aa14.37□□□□□ -0.11
CLN3-218ENST00000565688 SNRPBP14678 240 aaKnown RBP14.37□□□□□ -0.11
CLN3-218ENST00000565688 SSBP2P81877 361 aaPredicted RBP14.37□□□□□ -0.11
CLN3-218ENST00000565688 IGSF11Q5DX21 431 aa14.37□□□□□ -0.11
CLN3-218ENST00000565688 OR5T1Q8NG75 326 aa14.37□□□□□ -0.11
CLN3-218ENST00000565688 OR10R2Q8NGX6 335 aa14.37□□□□□ -0.11
CLN3-218ENST00000565688 HARBI1Q96MB7 349 aa14.37□□□□□ -0.11
CLN3-218ENST00000565688 IGLV1-51P01701 117 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 GSTT2P0CG29 244 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 GSTT2BP0CG30 244 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 RAB6AP20340 208 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 AADACP22760 399 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 MAP2K4P45985 399 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 PJVKQ0ZLH3 352 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 PLA2G7Q13093 441 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 TBCEQ15813 527 aaPredicted RBP14.36□□□□□ -0.11
CLN3-218ENST00000565688 TMEM177Q53S58 311 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 ZNF367Q7RTV3 350 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 RSRP1Q9BUV0 290 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 VCX3BQ9H321 246 aa14.36□□□□□ -0.11
CLN3-218ENST00000565688 RBM7Q9Y580 266 aaKnown RBP14.36□□□□□ -0.11
CLN3-218ENST00000565688 METTL21EPA6NDL7 271 aa14.35□□□□□ -0.11
CLN3-218ENST00000565688 IFITM5A6NNB3 132 aa14.35□□□□□ -0.11
CLN3-218ENST00000565688 MFNGO00587 321 aa14.35□□□□□ -0.11
CLN3-218ENST00000565688 SHOXO15266 292 aa14.35□□□□□ -0.11
CLN3-218ENST00000565688 HIST1H1DP16402 221 aaKnown RBP14.35□□□□□ -0.11
CLN3-218ENST00000565688 GNB3P16520 340 aa14.35□□□□□ -0.11
CLN3-218ENST00000565688 KLF5Q13887 457 aaPredicted RBP14.35□□□□□ -0.11
CLN3-218ENST00000565688 SRSF7Q16629 238 aaKnown RBP eCLIP14.35□□□□□ -0.11
CLN3-218ENST00000565688 ADTRPQ96IZ2 230 aa14.35□□□□□ -0.11
CLN3-218ENST00000565688 GINS4Q9BRT9 223 aa14.35□□□□□ -0.11
CLN3-218ENST00000565688 TINAGL1Q9GZM7 467 aaPredicted RBP14.35□□□□□ -0.11
CLN3-218ENST00000565688 BLOC1S6Q9UL45 172 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms