RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 GSTT2P0CG29 244 aa17.44■□□□□ 0.38
CLN3-215ENST00000565236 GSTT2BP0CG30 244 aa17.44■□□□□ 0.38
CLN3-215ENST00000565236 AKIRIN2Q53H80 203 aa17.44■□□□□ 0.38
CLN3-215ENST00000565236 ACTBL2Q562R1 376 aa17.44■□□□□ 0.38
CLN3-215ENST00000565236 UNQ5815/PRO19632Q6UWF5 114 aa17.44■□□□□ 0.38
CLN3-215ENST00000565236 PDPNQ86YL7 162 aa17.44■□□□□ 0.38
CLN3-215ENST00000565236 CASTOR1Q8WTX7 329 aa17.44■□□□□ 0.38
CLN3-215ENST00000565236 FLYWCH2Q96CP2 140 aaKnown RBP17.44■□□□□ 0.38
CLN3-215ENST00000565236 FAM103A1Q9BTL3 118 aaKnown RBP17.44■□□□□ 0.38
CLN3-215ENST00000565236 TOLLIPQ9H0E2 274 aa17.44■□□□□ 0.38
CLN3-215ENST00000565236 RAB27BO00194 218 aa17.43■□□□□ 0.38
CLN3-215ENST00000565236 HIST1H1DP16402 221 aaKnown RBP17.43■□□□□ 0.38
CLN3-215ENST00000565236 CD40LGP29965 261 aa17.43■□□□□ 0.38
CLN3-215ENST00000565236 TALDO1P37837 337 aa17.43■□□□□ 0.38
CLN3-215ENST00000565236 INSL3P51460 131 aa17.43■□□□□ 0.38
CLN3-215ENST00000565236 ARFRP1Q13795 201 aa17.43■□□□□ 0.38
CLN3-215ENST00000565236 ASPHD1Q5U4P2 390 aa17.43■□□□□ 0.38
CLN3-215ENST00000565236 PYHIN1Q6K0P9 492 aa17.43■□□□□ 0.38
CLN3-215ENST00000565236 C11orf87Q6NUJ2 197 aa17.43■□□□□ 0.38
CLN3-215ENST00000565236 PRR25Q96S07 402 aa17.43■□□□□ 0.38
CLN3-215ENST00000565236 SLC35D1Q9NTN3 355 aa17.43■□□□□ 0.38
CLN3-215ENST00000565236 ZNF230Q9UIE0 474 aaPredicted RBP17.43■□□□□ 0.38
CLN3-215ENST00000565236 TRBV6-7A0A0A0MS04 114 aa17.42■□□□□ 0.38
CLN3-215ENST00000565236 A0A0B4J203 849 aa17.42■□□□□ 0.38
CLN3-215ENST00000565236 MFNGO00587 321 aa17.42■□□□□ 0.38
CLN3-215ENST00000565236 CA2P00918 260 aa17.42■□□□□ 0.38
CLN3-215ENST00000565236 LFNGQ8NES3 379 aa17.42■□□□□ 0.38
CLN3-215ENST00000565236 MAFIPQ8WZ33 124 aa17.42■□□□□ 0.38
CLN3-215ENST00000565236 CABLES2Q9BTV7 478 aa17.42■□□□□ 0.38
CLN3-215ENST00000565236 ALX4Q9H161 411 aaPredicted RBP17.42■□□□□ 0.38
CLN3-215ENST00000565236 ATG5Q9H1Y0 275 aa17.42■□□□□ 0.38
CLN3-215ENST00000565236 OR2D2Q9H210 308 aa17.42■□□□□ 0.38
CLN3-215ENST00000565236 RBM7Q9Y580 266 aaKnown RBP17.42■□□□□ 0.38
CLN3-215ENST00000565236 SLC25A17O43808 307 aa17.41■□□□□ 0.38
CLN3-215ENST00000565236 DIRAS3O95661 229 aa17.41■□□□□ 0.38
CLN3-215ENST00000565236 ATP6V1G2O95670 118 aa17.41■□□□□ 0.38
CLN3-215ENST00000565236 UBE2UQ5VVX9 321 aa17.41■□□□□ 0.38
CLN3-215ENST00000565236 DCUN1D4Q92564 292 aa17.41■□□□□ 0.38
CLN3-215ENST00000565236 MS4A10Q96PG2 267 aa17.41■□□□□ 0.38
CLN3-215ENST00000565236 GINS4Q9BRT9 223 aa17.41■□□□□ 0.38
CLN3-215ENST00000565236 CENPOQ9BU64 300 aa17.41■□□□□ 0.38
CLN3-215ENST00000565236 Q9H521 79 aa17.41■□□□□ 0.38
CLN3-215ENST00000565236 SDHAF2Q9NX18 166 aa17.41■□□□□ 0.38
CLN3-215ENST00000565236 LINC01619G3V211 115 aa17.4■□□□□ 0.38
CLN3-215ENST00000565236 OVOL1O14753 267 aa17.4■□□□□ 0.38
CLN3-215ENST00000565236 SNRPBP14678 240 aaKnown RBP17.4■□□□□ 0.38
CLN3-215ENST00000565236 PSMB9P28065 219 aa17.4■□□□□ 0.38
CLN3-215ENST00000565236 LGALS7P47929 136 aa17.4■□□□□ 0.38
CLN3-215ENST00000565236 CBX3Q13185 183 aa17.4■□□□□ 0.38
CLN3-215ENST00000565236 FXYD3Q14802 87 aa17.4■□□□□ 0.38
CLN3-215ENST00000565236 ARL6IP1Q15041 203 aa17.4■□□□□ 0.38
CLN3-215ENST00000565236 NR2C2APQ86WQ0 139 aa17.4■□□□□ 0.38
CLN3-215ENST00000565236 SPARTQ8N0X7 666 aa17.4■□□□□ 0.38
CLN3-215ENST00000565236 ARPC1AQ92747 370 aa17.4■□□□□ 0.38
CLN3-215ENST00000565236 ZNF256Q9Y2P7 627 aaPredicted RBP17.4■□□□□ 0.38
CLN3-215ENST00000565236 LSM4Q9Y4Z0 139 aaKnown RBP17.4■□□□□ 0.38
CLN3-215ENST00000565236 SMIM30A4D0T7 59 aa17.39■□□□□ 0.37
CLN3-215ENST00000565236 CNIH1O95406 144 aa17.39■□□□□ 0.37
CLN3-215ENST00000565236 LGALS1P09382 135 aaKnown RBP17.39■□□□□ 0.37
CLN3-215ENST00000565236 FGF9P31371 208 aaPredicted RBP17.39■□□□□ 0.37
CLN3-215ENST00000565236 TAGLNQ01995 201 aaKnown RBP17.39■□□□□ 0.37
CLN3-215ENST00000565236 SRSF7Q16629 238 aaKnown RBP eCLIP17.39■□□□□ 0.37
CLN3-215ENST00000565236 ZNF429Q86V71 674 aa17.39■□□□□ 0.37
CLN3-215ENST00000565236 GRPEL2Q8TAA5 225 aa17.39■□□□□ 0.37
CLN3-215ENST00000565236 SLA2Q9H6Q3 261 aa17.39■□□□□ 0.37
CLN3-215ENST00000565236 TPSG1Q9NRR2 321 aa17.39■□□□□ 0.37
CLN3-215ENST00000565236 TXNL4BQ9NX01 149 aaKnown RBP17.39■□□□□ 0.37
CLN3-215ENST00000565236 IGHV3-11P01762 117 aa17.38■□□□□ 0.37
CLN3-215ENST00000565236 TPPP2P59282 170 aa17.38■□□□□ 0.37
CLN3-215ENST00000565236 CDNFQ49AH0 187 aa17.38■□□□□ 0.37
CLN3-215ENST00000565236 FCGR1BQ92637 280 aa17.38■□□□□ 0.37
CLN3-215ENST00000565236 DLX4Q92988 240 aaPredicted RBP17.38■□□□□ 0.37
CLN3-215ENST00000565236 YTHDF1Q9BYJ9 559 aaKnown RBP17.38■□□□□ 0.37
CLN3-215ENST00000565236 SORL1Q92673 2214 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 NOTOA8MTQ0 251 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 ARPC1BO15143 372 aaKnown RBP17.37■□□□□ 0.37
CLN3-215ENST00000565236 LY86O95711 162 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 SLURP1P55000 103 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 RTL8BQ17RB0 113 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 Q6ZS49 121 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 TPRA1Q86W33 373 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 BVESQ8NE79 360 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 HARBI1Q96MB7 349 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 ZNF355PQ9NSJ1 428 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 ELF5Q9UKW6 265 aaPredicted RBP17.37■□□□□ 0.37
CLN3-215ENST00000565236 STUB1Q9UNE7 303 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 SSR3Q9UNL2 185 aa17.37■□□□□ 0.37
CLN3-215ENST00000565236 IGHV4OR15-8A0A075B7B6 117 aa17.36■□□□□ 0.37
CLN3-215ENST00000565236 A0A087WW49 117 aa17.36■□□□□ 0.37
CLN3-215ENST00000565236 SHOXO15266 292 aa17.36■□□□□ 0.37
CLN3-215ENST00000565236 SAP30O75446 220 aa17.36■□□□□ 0.37
CLN3-215ENST00000565236 IGLV2-23P01705 113 aa17.36■□□□□ 0.37
CLN3-215ENST00000565236 TRGV3P03979 118 aa17.36■□□□□ 0.37
CLN3-215ENST00000565236 HSPB1P04792 205 aaKnown RBP17.36■□□□□ 0.37
CLN3-215ENST00000565236 NHLRC4P0CG21 123 aaPredicted RBP17.36■□□□□ 0.37
CLN3-215ENST00000565236 RRASP10301 218 aa17.36■□□□□ 0.37
CLN3-215ENST00000565236 DTYMKP23919 212 aa17.36■□□□□ 0.37
CLN3-215ENST00000565236 PJVKQ0ZLH3 352 aa17.36■□□□□ 0.37
CLN3-215ENST00000565236 H1FOOQ8IZA3 346 aaPredicted RBP17.36■□□□□ 0.37
CLN3-215ENST00000565236 ST6GALNAC5Q9BVH7 336 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms