RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SRRM4A7MD48 611 aaKnown RBP11.51□□□□□ -0.57
CLN3-213ENST00000565047 H7C2Y5 167 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 BET1O15155 118 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 SPDEFO95238 335 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 OR8U9P0C7N5 309 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 GADD45AP24522 165 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 PSMB9P28065 219 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 DGCR2P98153 550 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 TMEM65Q6PI78 240 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 ZNF773Q6PK81 442 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 H1FOOQ8IZA3 346 aaPredicted RBP11.51□□□□□ -0.57
CLN3-213ENST00000565047 OR1N2Q8NGR9 330 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 OR10J5Q8NHC4 309 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 CASTOR1Q8WTX7 329 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 DDB2Q92466 427 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 FAM103A1Q9BTL3 118 aaKnown RBP11.51□□□□□ -0.57
CLN3-213ENST00000565047 ALX4Q9H161 411 aaPredicted RBP11.51□□□□□ -0.57
CLN3-213ENST00000565047 OR51E2Q9H255 320 aa11.51□□□□□ -0.57
CLN3-213ENST00000565047 FOXA2Q9Y261 457 aaPredicted RBP11.51□□□□□ -0.57
CLN3-213ENST00000565047 LSM4Q9Y4Z0 139 aaKnown RBP11.51□□□□□ -0.57
CLN3-213ENST00000565047 A0A1W2PN81 502 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 METTL21EPA6NDL7 271 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 M0R1X1 148 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 RAMP3O60896 148 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 CA2P00918 260 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 DTYMKP23919 212 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 CHRNA7P36544 502 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 RAB25P57735 213 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 ZNF616Q08AN1 781 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 ECSCRQ19T08 205 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 ZNF260Q3ZCT1 412 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 CDNFQ49AH0 187 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 C9orf66Q5T8R8 295 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 TPRA1Q86W33 373 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 PPP1R27Q86WC6 154 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 DPF1Q92782 380 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 FLYWCH2Q96CP2 140 aaKnown RBP11.5□□□□□ -0.57
CLN3-213ENST00000565047 CLCC1Q96S66 551 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 TSNAXQ99598 290 aaKnown RBP11.5□□□□□ -0.57
CLN3-213ENST00000565047 ATG5Q9H1Y0 275 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 OR2D2Q9H210 308 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 RNF167Q9H6Y7 350 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 SLC35D1Q9NTN3 355 aa11.5□□□□□ -0.57
CLN3-213ENST00000565047 A0A075B6Q4 140 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 IGLV2-14P01704 120 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 CLEC2LP0C7M8 214 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 OR8U8P0C7N1 319 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 LGALS7P47929 136 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 RPS16P62249 146 aaKnown RBP11.49□□□□□ -0.57
CLN3-213ENST00000565047 PJVKQ0ZLH3 352 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 TMEM177Q53S58 311 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 DEFB121Q5J5C9 76 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 HACD4Q5VWC8 232 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 LFNGQ8NES3 379 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 RHOVQ96L33 236 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 OR5B12Q96R08 314 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 B9D2Q9BPU9 175 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 Q9H521 79 aa11.49□□□□□ -0.57
CLN3-213ENST00000565047 LINC00473A8K010 186 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 SEC14L6B5MCN3 397 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 SLC25A17O43808 307 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 SSX5O60225 188 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 APOA2P02652 100 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 DUTP33316 252 aaKnown RBP11.48□□□□□ -0.57
CLN3-213ENST00000565047 SDC2P34741 201 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 MRPS15P82914 257 aaKnown RBP11.48□□□□□ -0.57
CLN3-213ENST00000565047 TMEM267Q0VDI3 215 aaPredicted RBP11.48□□□□□ -0.57
CLN3-213ENST00000565047 ARL6IP1Q15041 203 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 PLGLAQ15195 96 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 ACTBL2Q562R1 376 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 SFXN4Q6P4A7 337 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 DCUN1D4Q92564 292 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 DCSTAMPQ9H295 470 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 DAPK2Q9UIK4 370 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 SSR3Q9UNL2 185 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 A3GALT2U3KPV4 340 aa11.48□□□□□ -0.57
CLN3-213ENST00000565047 BRI3O95415 125 aa11.47□□□□□ -0.57
CLN3-213ENST00000565047 LGALS1P09382 135 aaKnown RBP11.47□□□□□ -0.57
CLN3-213ENST00000565047 TAGLNQ01995 201 aaKnown RBP11.47□□□□□ -0.57
CLN3-213ENST00000565047 EIF4EBP1Q13541 118 aaPredicted RBP11.47□□□□□ -0.57
CLN3-213ENST00000565047 ARFRP1Q13795 201 aa11.47□□□□□ -0.57
CLN3-213ENST00000565047 FXYD3Q14802 87 aa11.47□□□□□ -0.57
CLN3-213ENST00000565047 PYHIN1Q6K0P9 492 aa11.47□□□□□ -0.57
CLN3-213ENST00000565047 C11orf87Q6NUJ2 197 aa11.47□□□□□ -0.57
CLN3-213ENST00000565047 UNQ5815/PRO19632Q6UWF5 114 aa11.47□□□□□ -0.57
CLN3-213ENST00000565047 ARPC1AQ92747 370 aa11.47□□□□□ -0.57
CLN3-213ENST00000565047 DLX4Q92988 240 aaPredicted RBP11.47□□□□□ -0.57
CLN3-213ENST00000565047 CENPOQ9BU64 300 aa11.47□□□□□ -0.57
CLN3-213ENST00000565047 ZMAT5Q9UDW3 170 aaKnown RBP11.47□□□□□ -0.57
CLN3-213ENST00000565047 RRP15Q9Y3B9 282 aaKnown RBP11.47□□□□□ -0.57
CLN3-213ENST00000565047 IGHV4OR15-8A0A075B7B6 117 aa11.46□□□□□ -0.57
CLN3-213ENST00000565047 A0A087WW49 117 aa11.46□□□□□ -0.57
CLN3-213ENST00000565047 HLA-DQB1P01920 261 aa11.46□□□□□ -0.57
CLN3-213ENST00000565047 TALDO1P37837 337 aa11.46□□□□□ -0.57
CLN3-213ENST00000565047 INSL3P51460 131 aa11.46□□□□□ -0.57
CLN3-213ENST00000565047 KCTD21Q4G0X4 260 aa11.46□□□□□ -0.57
CLN3-213ENST00000565047 BVESQ8NE79 360 aa11.46□□□□□ -0.57
CLN3-213ENST00000565047 OR5H6Q8NGV6 325 aa11.46□□□□□ -0.57
CLN3-213ENST00000565047 LGALS14Q8TCE9 139 aa11.46□□□□□ -0.57
CLN3-213ENST00000565047 NUDCD2Q8WVJ2 157 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms