RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 CFHR4Q92496 578 aa16.62■□□□□ 0.25
CLN3-212ENST00000564574 ZDHHC16Q969W1 377 aa16.62■□□□□ 0.25
CLN3-212ENST00000564574 RTBDNQ9BSG5 229 aaPredicted RBP16.62■□□□□ 0.25
CLN3-212ENST00000564574 C5orf66Q9H5L9 145 aa16.62■□□□□ 0.25
CLN3-212ENST00000564574 PRELID3BQ9Y3B1 194 aa16.62■□□□□ 0.25
CLN3-212ENST00000564574 PGLYRP1O75594 196 aaPredicted RBP16.61■□□□□ 0.25
CLN3-212ENST00000564574 APOA2P02652 100 aa16.61■□□□□ 0.25
CLN3-212ENST00000564574 TCRBP04435 133 aa16.61■□□□□ 0.25
CLN3-212ENST00000564574 FAM157CP0CG43 387 aa16.61■□□□□ 0.25
CLN3-212ENST00000564574 PIGPP57054 158 aa16.61■□□□□ 0.25
CLN3-212ENST00000564574 Q6YL49 198 aa16.61■□□□□ 0.25
CLN3-212ENST00000564574 KCTD9Q7L273 389 aa16.61■□□□□ 0.25
CLN3-212ENST00000564574 TCTEX1D1Q8N7M0 179 aa16.61■□□□□ 0.25
CLN3-212ENST00000564574 ZNF383Q8NA42 475 aa16.61■□□□□ 0.25
CLN3-212ENST00000564574 ZNF48Q96MX3 618 aaPredicted RBP16.61■□□□□ 0.25
CLN3-212ENST00000564574 MDFIC2A0A1B0GVS7 189 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 FAM90A9PA6NNJ1 464 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 LINC00473A8K010 186 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 H0YJW9 148 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 TNFSF12O43508 249 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 PTTG1O95997 202 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 RRASP10301 218 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 PI3P19957 117 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 KIR2DS2P43631 304 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 RAB13P51153 203 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 KRTAP21-3Q3LHN1 58 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 THNSL2Q86YJ6 484 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 DRAXINQ8NBI3 349 aaPredicted RBP16.6■□□□□ 0.25
CLN3-212ENST00000564574 DUSP18Q8NEJ0 188 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 TCTEX1D2Q8WW35 142 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 DDB2Q92466 427 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 SSX3Q99909 188 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 NUBP2Q9Y5Y2 271 aa16.6■□□□□ 0.25
CLN3-212ENST00000564574 MPPED1O15442 326 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 RLN1P04808 185 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 PAX6P26367 422 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 TAS2R31P59538 309 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 RPL30P62888 115 aaKnown RBP16.59■□□□□ 0.25
CLN3-212ENST00000564574 CBX3Q13185 183 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 RBMS3Q6XE24 437 aaKnown RBP16.59■□□□□ 0.25
CLN3-212ENST00000564574 GLDNQ6ZMI3 551 aaPredicted RBP16.59■□□□□ 0.25
CLN3-212ENST00000564574 NRARPQ7Z6K4 114 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 TBC1D26Q86UD7 250 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 PDPNQ86YL7 162 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 CENPSQ8N2Z9 138 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 SIGLECL1Q8N7X8 197 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 OR5R1Q8NH85 324 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 C20orf85Q9H1P6 137 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 OCEL1Q9H607 264 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 FAM212BQ9NTI7 297 aaPredicted RBP16.59■□□□□ 0.25
CLN3-212ENST00000564574 SLC35D1Q9NTN3 355 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 LIN7CQ9NUP9 197 aaKnown RBP16.59■□□□□ 0.25
CLN3-212ENST00000564574 WASHC3Q9Y3C0 194 aa16.59■□□□□ 0.25
CLN3-212ENST00000564574 B3GALNT1O75752 331 aa16.58■□□□□ 0.24
CLN3-212ENST00000564574 FAM106CPP0CH98 169 aa16.58■□□□□ 0.24
CLN3-212ENST00000564574 F2RP25116 425 aa16.58■□□□□ 0.24
CLN3-212ENST00000564574 IER3P46695 156 aa16.58■□□□□ 0.24
CLN3-212ENST00000564574 UBE2MP61081 183 aaKnown RBP16.58■□□□□ 0.24
CLN3-212ENST00000564574 EBI3Q14213 229 aa16.58■□□□□ 0.24
CLN3-212ENST00000564574 RTL8BQ17RB0 113 aa16.58■□□□□ 0.24
CLN3-212ENST00000564574 C11orf88Q6PI97 169 aa16.58■□□□□ 0.24
CLN3-212ENST00000564574 TMEM86BQ8N661 226 aa16.58■□□□□ 0.24
CLN3-212ENST00000564574 ZFAND2BQ8WV99 257 aa16.58■□□□□ 0.24
CLN3-212ENST00000564574 SSMEM1Q8WWF3 244 aa16.58■□□□□ 0.24
CLN3-212ENST00000564574 BTBD17A6NE02 478 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 CRYM-AS1A6NIL9 109 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 ARPC1BO15143 372 aaKnown RBP16.57■□□□□ 0.24
CLN3-212ENST00000564574 RBFOX2O43251 390 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLN3-212ENST00000564574 VENTXO95231 258 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 SNRNP70P08621 437 aaKnown RBP16.57■□□□□ 0.24
CLN3-212ENST00000564574 RGS21Q2M5E4 152 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 DHRS7BQ6IAN0 325 aaPredicted RBP16.57■□□□□ 0.24
CLN3-212ENST00000564574 TMED4Q7Z7H5 227 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 OR2T10Q8NGZ9 312 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 OR51H1Q8NH63 302 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 CD300LFQ8TDQ1 290 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 ZNF418Q8TF45 676 aaPredicted RBP16.57■□□□□ 0.24
CLN3-212ENST00000564574 CAPSLQ8WWF8 208 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 GPHA2Q96T91 129 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 NAA60Q9H7X0 242 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 POMT1Q9Y6A1 747 aa16.57■□□□□ 0.24
CLN3-212ENST00000564574 IGHV3-72A0A0B4J1Y9 119 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 TEX13DA0A0J9YY54 714 aaPredicted RBP16.56■□□□□ 0.24
CLN3-212ENST00000564574 H3BUX3 64 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 H7C2Y5 167 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 LINC00205P59089 165 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 DHODHQ02127 395 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 TMEM128Q5BJH2 165 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 PLET1Q6UQ28 207 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 SLC25A42Q86VD7 318 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 SGPP2Q8IWX5 399 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 SPAG16Q8N0X2 631 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 ADAD2Q8NCV1 583 aaKnown RBP16.56■□□□□ 0.24
CLN3-212ENST00000564574 OR4S2Q8NH73 311 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 PIFOQ8TCI5 191 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 TMEM230Q96A57 120 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 RNF5Q99942 180 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 ALX4Q9H161 411 aaPredicted RBP16.56■□□□□ 0.24
CLN3-212ENST00000564574 NUDT15Q9NV35 164 aa16.56■□□□□ 0.24
CLN3-212ENST00000564574 PITPNC1Q9UKF7 332 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms