RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 TPTE2P1Q5T6R2 138 aa10.41□□□□□ -0.74
CLK3-214ENST00000564096 DHRS7BQ6IAN0 325 aaPredicted RBP10.41□□□□□ -0.74
CLK3-214ENST00000564096 SPAG16Q8N0X2 631 aa10.41□□□□□ -0.74
CLK3-214ENST00000564096 OR8H3Q8N146 312 aa10.41□□□□□ -0.74
CLK3-214ENST00000564096 C12orf45Q8N5I9 185 aaPredicted RBP10.41□□□□□ -0.74
CLK3-214ENST00000564096 IL22RA2Q969J5 263 aa10.41□□□□□ -0.74
CLK3-214ENST00000564096 ZNF251Q9BRH9 671 aa10.41□□□□□ -0.74
CLK3-214ENST00000564096 MRPL20Q9BYC9 149 aaKnown RBP10.41□□□□□ -0.74
CLK3-214ENST00000564096 NBPF19A0A087WUL8 3843 aa10.41□□□□□ -0.74
CLK3-214ENST00000564096 PRRC2AP48634 2157 aaKnown RBP10.41□□□□□ -0.74
CLK3-214ENST00000564096 CENPVL3A0A0U1RRI6 287 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 A0A1W2PRD5 423 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 A0A1W2PRF3 423 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 A0A1W2PRM7 423 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 CD5LO43866 347 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 TRAPPC2P0DI81 140 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 TRAPPC2BP0DI82 140 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 REG1BP48304 166 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 TMEM187Q14656 261 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 OR2B11Q5JQS5 317 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 LIN54Q6MZP7 749 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 LIAT1Q6ZQX7 453 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 PDPNQ86YL7 162 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 ZNF695Q8IW36 515 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 UXS1Q8NBZ7 420 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 RNASE11Q8TAA1 199 aaKnown RBP10.4□□□□□ -0.74
CLK3-214ENST00000564096 RBPMSQ93062 196 aaKnown RBP10.4□□□□□ -0.74
CLK3-214ENST00000564096 ST6GALNAC6Q969X2 333 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 TP53RKQ96S44 253 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 SLC35D1Q9NTN3 355 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 COMMD9Q9P000 198 aa10.4□□□□□ -0.74
CLK3-214ENST00000564096 CSMD2Q7Z408 3487 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 LINC00473A8K010 186 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 VGLL3A8MV65 326 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 FCGR3BO75015 233 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 IFNA21P01568 189 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 HNF1AP20823 631 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 MC5RP33032 325 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 SAA4P35542 130 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 AKR1C2P52895 323 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 ERVK-16P61578 105 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 RRAS2P62070 204 aaPredicted RBP10.39□□□□□ -0.75
CLK3-214ENST00000564096 SP6Q3SY56 376 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 TMEM268Q5VZI3 342 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 CIARTQ8N365 385 aaPredicted RBP10.39□□□□□ -0.75
CLK3-214ENST00000564096 LRTM2Q8N967 370 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 ZNF383Q8NA42 475 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 DRAXINQ8NBI3 349 aaPredicted RBP10.39□□□□□ -0.75
CLK3-214ENST00000564096 NANPQ8TBE9 248 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 MALSU1Q96EH3 234 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 C18orf12Q96KH6 178 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 GPHA2Q96T91 129 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 NABP2Q9BQ15 211 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 AIFM2Q9BRQ8 373 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 WASHC3Q9Y3C0 194 aa10.39□□□□□ -0.75
CLK3-214ENST00000564096 DOCK11Q5JSL3 2073 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 IGHV1-3A0A0C4DH29 117 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 H0YJW9 148 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 LY6LH3BQJ8 138 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 H7C2Y5 167 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 HPRT1P00492 218 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 CT45A6P0DMU7 189 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 CT45A5P0DMU8 189 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 CT45A7P0DMV0 189 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 BCAP31P51572 246 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 RPL30P62888 115 aaKnown RBP10.38□□□□□ -0.75
CLK3-214ENST00000564096 ANKRD55Q3KP44 614 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 LHFPL4Q7Z7J7 247 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 MOB3BQ86TA1 216 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 OR5AN1Q8NGI8 311 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 GLYATL2Q8WU03 294 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 DDB2Q92466 427 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 TMEM56Q96MV1 263 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 SPIN2AQ99865 258 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 SPIN2BQ9BPZ2 258 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 PLEKHA2Q9HB19 425 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 RAB18Q9NP72 206 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 MGAT4CQ9UBM8 478 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 FAM96BQ9Y3D0 163 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 TMED3Q9Y3Q3 217 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 HILPDAQ9Y5L2 63 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 TMEM56-RWDD3S4R434 201 aa10.38□□□□□ -0.75
CLK3-214ENST00000564096 ABCA2Q9BZC7 2435 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 A0A1B0GVG6 124 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 A0A1W2PPI3 338 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 GOSR2O14653 212 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 PROP1O75360 226 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 CDS2O95674 445 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 CRYZL1O95825 349 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 FBP1P09467 338 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 BRS3P32247 399 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 LPAR6P43657 344 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 SSX2Q16385 188 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 THOC7Q6I9Y2 204 aaKnown RBP10.37□□□□□ -0.75
CLK3-214ENST00000564096 SPNS3Q6ZMD2 512 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 OR4C13Q8NGP0 309 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 OR5M8Q8NGP6 311 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 OSR1Q8TAX0 266 aaPredicted RBP10.37□□□□□ -0.75
CLK3-214ENST00000564096 ASB13Q8WXK3 278 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 RRNAD1Q96FB5 475 aaKnown RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms