RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 GRPEL2Q8TAA5 225 aa13.73□□□□□ -0.21
NME3-205ENST00000563854 MS4A10Q96PG2 267 aa13.73□□□□□ -0.21
NME3-205ENST00000563854 B9D2Q9BPU9 175 aa13.73□□□□□ -0.21
NME3-205ENST00000563854 SLC35D1Q9NTN3 355 aa13.73□□□□□ -0.21
NME3-205ENST00000563854 RBM7Q9Y580 266 aaKnown RBP13.73□□□□□ -0.21
NME3-205ENST00000563854 TRDV1A0A1B0GX56 115 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 MFNGO00587 321 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 ATP6V1G2O95670 118 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 HIST1H1DP16402 221 aaKnown RBP13.72□□□□□ -0.21
NME3-205ENST00000563854 TALDO1P37837 337 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 GABARAPL2P60520 117 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 ACTBL2Q562R1 376 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 C19orf54Q5BKX5 351 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 CD200R1LQ6Q8B3 271 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 PDPNQ86YL7 162 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 LFNGQ8NES3 379 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 GINS4Q9BRT9 223 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 ATG5Q9H1Y0 275 aa13.72□□□□□ -0.21
NME3-205ENST00000563854 METTL21EPA6NDL7 271 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 SPDEFO95238 335 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 IGHV3-11P01762 117 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 EGR2P11161 476 aaPredicted RBP13.71□□□□□ -0.21
NME3-205ENST00000563854 RAB6AP20340 208 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 CRIP2P52943 208 aaPredicted RBP13.71□□□□□ -0.21
NME3-205ENST00000563854 SLURP1P55000 103 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 TPPP2P59282 170 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 RUNX1Q01196 453 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 TCTEX1D1Q8N7M0 179 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 DCUN1D4Q92564 292 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 ARPC1AQ92747 370 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 FLYWCH2Q96CP2 140 aaKnown RBP13.71□□□□□ -0.21
NME3-205ENST00000563854 RNF5Q99942 180 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 CABLES2Q9BTV7 478 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 SCOCQ9UIL1 159 aa13.71□□□□□ -0.21
NME3-205ENST00000563854 RAB27BO00194 218 aa13.7□□□□□ -0.22
NME3-205ENST00000563854 OVOL1O14753 267 aa13.7□□□□□ -0.22
NME3-205ENST00000563854 CD40LGP29965 261 aa13.7□□□□□ -0.22
NME3-205ENST00000563854 CBX3Q13185 183 aa13.7□□□□□ -0.22
NME3-205ENST00000563854 NR2C2APQ86WQ0 139 aa13.7□□□□□ -0.22
NME3-205ENST00000563854 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.7□□□□□ -0.22
NME3-205ENST00000563854 Q9H521 79 aa13.7□□□□□ -0.22
NME3-205ENST00000563854 ZNF355PQ9NSJ1 428 aa13.7□□□□□ -0.22
NME3-205ENST00000563854 SDHAF2Q9NX18 166 aa13.7□□□□□ -0.22
NME3-205ENST00000563854 NUBP2Q9Y5Y2 271 aa13.7□□□□□ -0.22
NME3-205ENST00000563854 IGHV4OR15-8A0A075B7B6 117 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 A0A087WW49 117 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 LINC01619G3V211 115 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 SAP30O75446 220 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 CNIH1O95406 144 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 LGALS1P09382 135 aaKnown RBP13.69□□□□□ -0.22
NME3-205ENST00000563854 FXYD3Q14802 87 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 UBE2UQ5VVX9 321 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 PYHIN1Q6K0P9 492 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 ZNF562Q6V9R5 426 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 SPARTQ8N0X7 666 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 HARBI1Q96MB7 349 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 TOLLIPQ9H0E2 274 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 ELF5Q9UKW6 265 aaPredicted RBP13.69□□□□□ -0.22
NME3-205ENST00000563854 ZNF256Q9Y2P7 627 aaPredicted RBP13.69□□□□□ -0.22
NME3-205ENST00000563854 COL7A1Q02388 2944 aa13.69□□□□□ -0.22
NME3-205ENST00000563854 TRBV6-7A0A0A0MS04 114 aa13.68□□□□□ -0.22
NME3-205ENST00000563854 J3QRK9 145 aa13.68□□□□□ -0.22
NME3-205ENST00000563854 TRGV3P03979 118 aa13.68□□□□□ -0.22
NME3-205ENST00000563854 AKIRIN2Q53H80 203 aa13.68□□□□□ -0.22
NME3-205ENST00000563854 BVESQ8NE79 360 aa13.68□□□□□ -0.22
NME3-205ENST00000563854 DLX4Q92988 240 aaPredicted RBP13.68□□□□□ -0.22
NME3-205ENST00000563854 C5orf30Q96GV9 206 aa13.68□□□□□ -0.22
NME3-205ENST00000563854 TXNL4BQ9NX01 149 aaKnown RBP13.68□□□□□ -0.22
NME3-205ENST00000563854 ARPC1BO15143 372 aaKnown RBP13.67□□□□□ -0.22
NME3-205ENST00000563854 SHOXO15266 292 aa13.67□□□□□ -0.22
NME3-205ENST00000563854 MRPS14O60783 128 aaKnown RBP13.67□□□□□ -0.22
NME3-205ENST00000563854 GALP22466 123 aa13.67□□□□□ -0.22
NME3-205ENST00000563854 PJVKQ0ZLH3 352 aa13.67□□□□□ -0.22
NME3-205ENST00000563854 RTL8BQ17RB0 113 aa13.67□□□□□ -0.22
NME3-205ENST00000563854 OR5T1Q8NG75 326 aa13.67□□□□□ -0.22
NME3-205ENST00000563854 DAPK2Q9UIK4 370 aa13.67□□□□□ -0.22
NME3-205ENST00000563854 STUB1Q9UNE7 303 aa13.67□□□□□ -0.22
NME3-205ENST00000563854 IGKV1D-8A0A087WSZ0 117 aa13.66□□□□□ -0.22
NME3-205ENST00000563854 NOTOA8MTQ0 251 aa13.66□□□□□ -0.22
NME3-205ENST00000563854 INSL3P51460 131 aa13.66□□□□□ -0.22
NME3-205ENST00000563854 CDNFQ49AH0 187 aa13.66□□□□□ -0.22
NME3-205ENST00000563854 FCGR1BQ92637 280 aa13.66□□□□□ -0.22
NME3-205ENST00000563854 ASCL2Q99929 193 aa13.66□□□□□ -0.22
NME3-205ENST00000563854 ST6GALNAC5Q9BVH7 336 aa13.66□□□□□ -0.22
NME3-205ENST00000563854 SSR3Q9UNL2 185 aa13.66□□□□□ -0.22
NME3-205ENST00000563854 RRP15Q9Y3B9 282 aaKnown RBP13.66□□□□□ -0.22
NME3-205ENST00000563854 DNAH9Q9NYC9 4486 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 IGLV2-23P01705 113 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 APELAP0DMC3 54 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 LGALS7P47929 136 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 PITPNAQ00169 270 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 DEFA5Q01523 94 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 ARL6IP1Q15041 203 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 ZNF429Q86V71 674 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 H1FOOQ8IZA3 346 aaPredicted RBP13.65□□□□□ -0.22
NME3-205ENST00000563854 LGALS14Q8TCE9 139 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 NUDCD2Q8WVJ2 157 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 PHB2Q99623 299 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 SLA2Q9H6Q3 261 aa13.65□□□□□ -0.22
NME3-205ENST00000563854 LSM4Q9Y4Z0 139 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms