RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 THOC7Q6I9Y2 204 aaKnown RBP17.39■□□□□ 0.37
CLN3-209ENST00000561689 ABHD12Q8N2K0 398 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 RRNAD1Q96FB5 475 aaKnown RBP17.39■□□□□ 0.37
CLN3-209ENST00000561689 SPIN2AQ99865 258 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 SPIN2BQ9BPZ2 258 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 TMEM133Q9H2Q1 129 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 FBN2P35556 2912 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 PIGBOS1A0A0B4J2F0 54 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 J3QR06 171 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 NXPH3O95157 252 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 LIPFP07098 398 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 PET100P0DJ07 73 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 G6PCP35575 357 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 PDLIM4P50479 330 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 ATP5J2P56134 94 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 Q6ZRM9 215 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 TMUB2Q71RG4 321 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 CENPEQ02224 2701 aa17.38■□□□□ 0.37
CLN3-209ENST00000561689 A0A087X0M5 115 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 A0A1B0GX30 115 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 K7EPK0 472 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 IGHV2-5P01817 119 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 ZFP36P26651 326 aaKnown RBP17.37■□□□□ 0.37
CLN3-209ENST00000561689 CXorf66Q5JRM2 361 aaPredicted RBP17.37■□□□□ 0.37
CLN3-209ENST00000561689 FAM71E2Q8N5Q1 922 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 TCTEX1D1Q8N7M0 179 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 OR10X1Q8NGY0 326 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 LSM10Q969L4 123 aaKnown RBP17.37■□□□□ 0.37
CLN3-209ENST00000561689 RBMXL1Q96E39 390 aaKnown RBP17.37■□□□□ 0.37
CLN3-209ENST00000561689 CITED4Q96RK1 184 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 S1PR3Q99500 378 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 ARL6Q9H0F7 186 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 DOCK11Q5JSL3 2073 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 CELSR2Q9HCU4 2923 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 RNF222A6NCQ9 220 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 DEDDO75618 318 aa17.37■□□□□ 0.37
CLN3-209ENST00000561689 INO80EQ8NBZ0 244 aaPredicted RBP17.37■□□□□ 0.37
CLN3-209ENST00000561689 RPS10-NUDT3A0A1W2PQS6 291 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 LYL1P12980 280 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 S100A11P31949 105 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 ARF6P62330 175 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 ZNF383Q8NA42 475 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 OR9G1Q8NH87 305 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 CLDND2Q8NHS1 167 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 CD300LFQ8TDQ1 290 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 DDB2Q92466 427 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 PERPQ96FX8 193 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 FAM212BQ9NTI7 297 aaPredicted RBP17.36■□□□□ 0.37
CLN3-209ENST00000561689 CACNG5Q9UF02 275 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 PRELID3BQ9Y3B1 194 aa17.36■□□□□ 0.37
CLN3-209ENST00000561689 A0A1B0GU03 582 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 ST8SIA3O43173 380 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 IFNA7P01567 189 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 RLN2P04090 185 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 SMCO1Q147U7 214 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 ACOT7LQ6ZUV0 252 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 MAGT1Q9H0U3 335 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 UBQLN2Q9UHD9 624 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 KIAA1324LA8MWY0 1029 aaPredicted RBP17.35■□□□□ 0.37
CLN3-209ENST00000561689 SNAPC5O75971 98 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 NKX2-1P43699 371 aaPredicted RBP17.35■□□□□ 0.37
CLN3-209ENST00000561689 REG1BP48304 166 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 C8orf31Q8N9H6 132 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 ZNF596Q8TC21 504 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 FAM168AQ92567 244 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 MMP24Q9Y5R2 645 aa17.35■□□□□ 0.37
CLN3-209ENST00000561689 IGHV2-26A0A0B4J1V2 119 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 hCG_1809904A0A1W2PP81 198 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 A0A1W2PPE2 198 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 A0A1W2PR64 198 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 A0A1W2PRV1 198 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 MSGN1A6NI15 193 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 RBP4P02753 201 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 CT45A6P0DMU7 189 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 CT45A5P0DMU8 189 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 CT45A7P0DMV0 189 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 THBS3P49746 956 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 LMO4P61968 165 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 POLR2GP62487 172 aaKnown RBP eCLIP17.34■□□□□ 0.37
CLN3-209ENST00000561689 LCN2P80188 198 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 DIAPH2-AS1Q14236 149 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 ZNF787Q6DD87 383 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 ZNF833PQ6ZTB9 187 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 LINC00311Q8N616 119 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 Q8N7P7 452 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 POMT1Q9Y6A1 747 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 VPS13CQ709C8 3753 aa17.34■□□□□ 0.37
CLN3-209ENST00000561689 LEUTXA8MZ59 168 aa17.33■□□□□ 0.37
CLN3-209ENST00000561689 TOR1AO14656 332 aa17.33■□□□□ 0.37
CLN3-209ENST00000561689 PITX3O75364 302 aa17.33■□□□□ 0.37
CLN3-209ENST00000561689 OR2F2O95006 317 aa17.33■□□□□ 0.37
CLN3-209ENST00000561689 COX7A1P24310 79 aa17.33■□□□□ 0.37
CLN3-209ENST00000561689 OR2F1Q13607 317 aa17.33■□□□□ 0.37
CLN3-209ENST00000561689 RCL1Q9Y2P8 373 aaKnown RBP17.33■□□□□ 0.37
CLN3-209ENST00000561689 HPRT1P00492 218 aa17.33■□□□□ 0.36
CLN3-209ENST00000561689 SLC25A6P12236 298 aa17.33■□□□□ 0.36
CLN3-209ENST00000561689 KCNRGQ8N5I3 272 aa17.33■□□□□ 0.36
CLN3-209ENST00000561689 ADTRPQ96IZ2 230 aa17.33■□□□□ 0.36
CLN3-209ENST00000561689 PIMREGQ9BSJ6 248 aa17.33■□□□□ 0.36
CLN3-209ENST00000561689 MRPL20Q9BYC9 149 aaKnown RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms