RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	ACTG1	P63261	375 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	HOXC5	Q00444	222 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	FABP5	Q01469	135 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	SMAGP	Q0VAQ4	97 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	MED21	Q13503	144 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	DNAL1	Q4LDG9	190 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	FAM201A	Q5SY85	155 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	AMTN	Q6UX39	209 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	PLEKHG7	Q6ZR37	379 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435		Q6ZTI0	123 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	C2orf91	Q6ZV80	131 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	SPATA12	Q7Z6I5	190 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	NAA40	Q86UY6	237 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	GPHB5	Q86YW7	130 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	C1orf174	Q8IYL3	243 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435		Q8N402	240 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM156	Q8N614	296 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF283	Q8N7M2	679 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	OR11H2	Q8NH07	326 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	OR10A6	Q8NH74	314 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	CLDND2	Q8NHS1	167 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	RNASE11	Q8TAA1	199 aa	Known RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	SPACA4	Q8TDM5	124 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC37A2	Q8TED4	501 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435		Q8WTZ3	238 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	RNASE6	Q93091	150 aa	Known RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	TLCD1	Q96CP7	247 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	MS4A6E	Q96DS6	147 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF514	Q96K75	400 aa	Predicted RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	MGLL	Q99685	303 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM208	Q9BTX3	173 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	MED18	Q9BUE0	208 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	BBS2	Q9BXC9	721 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	MRO	Q9BYG7	248 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	METTL9	Q9H1A3	318 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	MS4A6A	Q9H2W1	248 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	HES4	Q9HCC6	221 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	NDUFB11	Q9NX14	153 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	EMC3	Q9P0I2	261 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	DNAJC12	Q9UKB3	198 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	SNX12	Q9UMY4	172 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	PSMD13	Q9UNM6	376 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435		A0A1W2PP64	1363 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ABCC12	Q96J65	1359 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	PIK3R4	Q99570	1358 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	RTEL1-TNFRSF6B	F6WH68	1400 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	CACNA1S	Q13698	1873 aa		0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	MDC1	Q14676	2089 aa	Known RBP	0.26	□□□□□ -2.37
SPG11-222	ENST00000560435	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	MPDZ	O75970	2070 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF638	Q14966	1978 aa	Known RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	STRCP1	A6NGW2	1772 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	THSD7A	Q9UPZ6	1657 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF532	Q9HCE3	1301 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	IGHV3-64	A0A075B6Q5	118 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	TMED7-TICAM2	A0A0A6YYA0	188 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	TRGV5	A0A0B4J1U4	118 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435		A0A1W2PQD3	144 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	C5orf49	A4QMS7	147 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	VPS37C	A5D8V6	355 aa	Predicted RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	ARRDC5	A6NEK1	342 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF860	A6NHJ4	632 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	C2orf74	A8MZ97	194 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	FNDC10	F2Z333	226 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435		F5H768	121 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	BHLHE40	O14503	412 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	COCH	O43405	550 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	TRAPPC3	O43617	180 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	GSTZ1	O43708	216 aa	Predicted RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	APOM	O95445	188 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	YEATS4	O95619	227 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	NPY	P01303	97 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	C1QC	P02747	245 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	IL6	P05231	212 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	HLA-DQB2	P05538	268 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	IL3	P08700	152 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	UCHL1	P09936	223 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	PET100	P0DJ07	73 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	CCL5	P13501	91 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	UGT2B7	P16662	529 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	CXCL2	P19875	107 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	ALDH3A1	P30838	453 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	IFNGR2	P38484	337 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	RPL27A	P46776	148 aa	Known RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	IDH3G	P51553	393 aa	Predicted RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	CTBP2	P56545	445 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	MAP3K7CL	P57077	242 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM33	P57088	247 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	CXCR4	P61073	352 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	TBPL1	P62380	186 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	POLR2G	P62487	172 aa	Known RBP eCLIP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	HLA-DRB3	P79483	266 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	TNFAIP6	P98066	277 aa	Predicted RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF90	Q03938	601 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	RELA	Q04206	551 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	PRDX4	Q13162	271 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	GNA13	Q14344	377 aa		0.25	□□□□□ -2.37

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms