RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 DHRS11Q6UWP2 260 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 GLDNQ6ZMI3 551 aaPredicted RBP10.33□□□□□ -0.76
NEDD8-208ENST00000560427 KLHDC1Q8N7A1 406 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 HSD17B10Q99714 261 aaKnown RBP10.33□□□□□ -0.76
NEDD8-208ENST00000560427 CITED1Q99966 193 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 WNT10AQ9GZT5 417 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 PLSCR3Q9NRY6 295 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 KIAA1456Q9P272 454 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 MTFP1Q9UDX5 166 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 ZNF580Q9UK33 172 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 RBMX2Q9Y388 322 aaKnown RBP10.33□□□□□ -0.76
NEDD8-208ENST00000560427 IGKV1D-13A0A0B4J2D9 117 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 PEX14O75381 377 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 IGLV2-14P01704 120 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 IGHG2P01859 326 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 FCER2P06734 321 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 IGKV1-13P0DP09 117 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 HLA-DMAP28067 261 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 S100A5P33763 92 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 HRH1P35367 487 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 HERV-K104P61576 105 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 ZNF660Q6AZW8 331 aaPredicted RBP10.32□□□□□ -0.76
NEDD8-208ENST00000560427 ZNF66Q6ZN08 573 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 LYSMD2Q8IV50 215 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 FOXRED2Q8IWF2 684 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 DRAXINQ8NBI3 349 aaPredicted RBP10.32□□□□□ -0.76
NEDD8-208ENST00000560427 OR6F1Q8NGZ6 308 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 OR52I2Q8NH67 350 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 SMIM4Q8WVI0 70 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 FLYWCH2Q96CP2 140 aaKnown RBP10.32□□□□□ -0.76
NEDD8-208ENST00000560427 C5orf30Q96GV9 206 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 TSNAXQ99598 290 aaKnown RBP10.32□□□□□ -0.76
NEDD8-208ENST00000560427 SLC35D1Q9NTN3 355 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 SIGLEC9Q9Y336 463 aa10.32□□□□□ -0.76
NEDD8-208ENST00000560427 HAX1O00165 279 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 HLA-DRB1P01911 266 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 PMP2P02689 132 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 TNFSF8P32971 234 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 LGALS7P47929 136 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 RFX2P48378 723 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 F2RL1P55085 397 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 TAS2R19P59542 299 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 C5orf64Q2M2E5 130 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 C9orf152Q5JTZ5 239 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 Q6ZS46 218 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 KCTD9Q7L273 389 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 SLC35E3Q7Z769 313 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 ARRDC1Q8N5I2 433 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 DDB2Q92466 427 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 MOB3AQ96BX8 217 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 TAS2R8Q9NYW2 309 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 KLK11Q9UBX7 282 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 PRELID3BQ9Y3B1 194 aa10.31□□□□□ -0.76
NEDD8-208ENST00000560427 TENM1Q9UKZ4 2725 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 DPPA5A6NC42 116 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 FABP12A6NFH5 140 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 AP4M1O00189 453 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 RRHO14718 337 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 GSTZ1O43708 216 aaPredicted RBP10.3□□□□□ -0.76
NEDD8-208ENST00000560427 IGKV1-16P04430 117 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 CSF1P09603 554 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 PTBP1P26599 531 aaKnown RBP eCLIP10.3□□□□□ -0.76
NEDD8-208ENST00000560427 KIR2DS2P43631 304 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 TSPAN5P62079 268 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 EIF4EBP1Q13541 118 aaPredicted RBP10.3□□□□□ -0.76
NEDD8-208ENST00000560427 TMEM177Q53S58 311 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 RNASE10Q5GAN6 216 aaKnown RBP10.3□□□□□ -0.76
NEDD8-208ENST00000560427 TMEM17Q86X19 198 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 TMEM229BQ8NBD8 167 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 OSR1Q8TAX0 266 aaPredicted RBP10.3□□□□□ -0.76
NEDD8-208ENST00000560427 WIPF2Q8TF74 440 aaPredicted RBP10.3□□□□□ -0.76
NEDD8-208ENST00000560427 CHPT1Q8WUD6 406 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 SECTM1Q8WVN6 248 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 SOSTQ9BQB4 213 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 ZNF2Q9BSG1 426 aaPredicted RBP10.3□□□□□ -0.76
NEDD8-208ENST00000560427 GON7Q9BXV9 100 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 SLC5A7Q9GZV3 580 aa10.3□□□□□ -0.76
NEDD8-208ENST00000560427 SH2D7A6NKC9 451 aaPredicted RBP10.29□□□□□ -0.76
NEDD8-208ENST00000560427 J3QRK9 145 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 CD74P04233 296 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 IFNA6P05013 189 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 VSIG10L2P0DP72 767 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 FXYD4P59646 89 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 RPS16P62249 146 aaKnown RBP10.29□□□□□ -0.76
NEDD8-208ENST00000560427 DGCR2P98153 550 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 CATR1Q13166 79 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 TMEM95Q3KNT9 176 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 RNASE12Q5GAN4 147 aaKnown RBP10.29□□□□□ -0.76
NEDD8-208ENST00000560427 LIN54Q6MZP7 749 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 LPCAT3Q6P1A2 487 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 BVESQ8NE79 360 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 SGMS2Q8NHU3 365 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 RITA1Q96K30 269 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 HARBI1Q96MB7 349 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 CCL28Q9NRJ3 127 aa10.29□□□□□ -0.76
NEDD8-208ENST00000560427 LINC00473A8K010 186 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 RBFOX2O43251 390 aaKnown RBP eCLIP10.28□□□□□ -0.76
NEDD8-208ENST00000560427 FBXO24O75426 580 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 IGF1P05019 195 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 S100GP29377 79 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms