RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 C10orf128Q5T292 105 aa7.02□□□□□ -1.29
SYNE2-220ENST00000555612 METRNQ9UJH8 293 aa7.02□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A10PA6NDY2 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A18PA6NE21 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A16PA6NEW6 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A20PA6NIJ5 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A8PA6NJQ4 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A7PA6NKC0 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A22PA8MWA6 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A12PA8MX19 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A5PA8MXJ8 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A23PA8MXZ1 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 H0Y980 276 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A15PP0C7V4 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A13PP0C7W8 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A14PP0C7W9 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 FAM90A24PP0C7X0 464 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 HOXA6P31267 233 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 C19orf54Q5BKX5 351 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 KLHDC1Q8N7A1 406 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 QTRT1Q9BXR0 403 aaKnown RBP7.01□□□□□ -1.29
SYNE2-220ENST00000555612 MIXL1Q9H2W2 232 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 GVINP1Q7Z2Y8 2422 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 SEC16AO15027 2179 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 TDRD6O60522 2096 aaKnown RBP7.01□□□□□ -1.29
SYNE2-220ENST00000555612 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.01□□□□□ -1.29
SYNE2-220ENST00000555612 TGFBR3LH3BV60 316 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 IGHV3-48P01763 117 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 CD1AP06126 327 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 EGR4Q05215 589 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 UNC119Q13432 240 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 TWIST1Q15672 202 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 PEAR1Q5VY43 1037 aaPredicted RBP7.01□□□□□ -1.29
SYNE2-220ENST00000555612 PTX4Q96A99 478 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 ZNF430Q9H8G1 570 aaPredicted RBP7.01□□□□□ -1.29
SYNE2-220ENST00000555612 S4R3C0 116 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 TMEM189A5PLL7 270 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 IGKV1D-33P01593 117 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 IGKV1-33P01594 117 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 NPPCP23582 126 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 HERVK_113P61574 105 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 PRB3Q04118 309 aaPredicted RBP7.01□□□□□ -1.29
SYNE2-220ENST00000555612 RNF212Q495C1 297 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 LSM10Q969L4 123 aaKnown RBP7.01□□□□□ -1.29
SYNE2-220ENST00000555612 RBKSQ9H477 322 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 IL36RNQ9UBH0 155 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 DSPPQ9NZW4 1301 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 IGHV3-49A0A0A0MS15 119 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 CELA3BP08861 270 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 HIST1H1BP16401 226 aaKnown RBP7.01□□□□□ -1.29
SYNE2-220ENST00000555612 CEBPEQ15744 281 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 BPIFA4PQ86YQ2 179 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 JMJD8Q96S16 334 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 C7orf66A4D0T2 115 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 H3BTX0 84 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 PGLYRP1O75594 196 aaPredicted RBP7.01□□□□□ -1.29
SYNE2-220ENST00000555612 MAS1LP35410 378 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 SNRPD3P62318 126 aaKnown RBP7.01□□□□□ -1.29
SYNE2-220ENST00000555612 RELQ04864 619 aaPredicted RBP7.01□□□□□ -1.29
SYNE2-220ENST00000555612 PCM1Q15154 2024 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 UBE2V2Q15819 145 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 UQCC3Q6UW78 93 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 SCGB1D4Q6XE38 83 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 OR5AU1Q8NGC0 362 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 OR10C1Q96KK4 312 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 TOLLIPQ9H0E2 274 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 CBLN4Q9NTU7 201 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 DPM3Q9P2X0 92 aa7.01□□□□□ -1.29
SYNE2-220ENST00000555612 CTXND1A0A1B0GTU2 59 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 M0R2Z0 102 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 HLA-DQB1P01920 261 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 ZFP36L1Q07352 338 aaKnown RBP7□□□□□ -1.29
SYNE2-220ENST00000555612 C1orf162Q8NEQ5 155 aaPredicted RBP7□□□□□ -1.29
SYNE2-220ENST00000555612 TRAV30A0A087WSZ9 112 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 IGKV3OR2-268A0A0C4DH90 116 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 E9PLN8 166 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 ZNF207O43670 478 aaKnown RBP7□□□□□ -1.29
SYNE2-220ENST00000555612 CRISP2P16562 243 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 ZXDCQ2QGD7 858 aaPredicted RBP7□□□□□ -1.29
SYNE2-220ENST00000555612 ITLN2Q8WWU7 325 aaPredicted RBP7□□□□□ -1.29
SYNE2-220ENST00000555612 VKORC1Q9BQB6 163 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 VAMP8Q9BV40 100 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 VAX2Q9UIW0 290 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 SPTBN2O15020 2390 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 IGHV3-66A0A0C4DH42 116 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 LINC00862A6NCI5 91 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 J3QW42 95 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 KLF4O43474 513 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 SMAGPQ0VAQ4 97 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 RPL39P5Q59GN2 51 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 SAXO1Q8IYX7 474 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 TRBV5-5A0A0J9YX44 114 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 LYNX1G3V0Z9 82 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 GCM2O75603 506 aaPredicted RBP7□□□□□ -1.29
SYNE2-220ENST00000555612 S1PR2O95136 353 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 GPX1P07203 203 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 LYNX1P0DP58 116 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 MEOX2P50222 304 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 SELENOTP62341 195 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 HIST3H3Q16695 136 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms