RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 DSCAML1Q8TD84 2053 aa21.74■■□□□ 1.07
CCDC88C-205ENST00000553403 NUDT19A8MXV4 375 aa21.73■■□□□ 1.07
CCDC88C-205ENST00000553403 M0R1X1 148 aa21.73■■□□□ 1.07
CCDC88C-205ENST00000553403 KRASP01116 189 aa21.73■■□□□ 1.07
CCDC88C-205ENST00000553403 G6PCP35575 357 aa21.73■■□□□ 1.07
CCDC88C-205ENST00000553403 NCR3LG1Q68D85 454 aa21.73■■□□□ 1.07
CCDC88C-205ENST00000553403 ZNF295-AS1Q8N0V1 137 aa21.73■■□□□ 1.07
CCDC88C-205ENST00000553403 MARC2Q969Z3 335 aa21.73■■□□□ 1.07
CCDC88C-205ENST00000553403 KAAG1Q9UBP8 84 aa21.73■■□□□ 1.07
CCDC88C-205ENST00000553403 ZNF705EA8MWA4 302 aaPredicted RBP21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 TEX46H3BTG2 121 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 RBFOX2O43251 390 aaKnown RBP eCLIP21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 TXNL1O43396 289 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 NDUFA2O43678 99 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 FBXO24O75426 580 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 KIR2DS2P43631 304 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 MIDNQ504T8 468 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 CT45A1Q5HYN5 189 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 ZNF439Q8NDP4 499 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 CT45A3Q8NHU0 189 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 GAL3ST2Q9H3Q3 398 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 RPUSD1Q9UJJ7 312 aaKnown RBP21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 SLC31A2O15432 143 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 NDUFB3O43676 98 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 MED6O75586 246 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 SPP1P10451 314 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 ZP3P21754 424 aa21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 CTNNBIP1Q9NSA3 81 aaPredicted RBP21.72■■□□□ 1.07
CCDC88C-205ENST00000553403 RAB19A4D1S5 217 aa21.71■■□□□ 1.07
CCDC88C-205ENST00000553403 KRBOX1C9JBD0 128 aa21.71■■□□□ 1.07
CCDC88C-205ENST00000553403 SHOXO15266 292 aa21.71■■□□□ 1.07
CCDC88C-205ENST00000553403 BLOC1S1P78537 153 aa21.71■■□□□ 1.07
CCDC88C-205ENST00000553403 LRRC10Q5BKY1 277 aa21.71■■□□□ 1.07
CCDC88C-205ENST00000553403 STX12Q86Y82 276 aa21.71■■□□□ 1.07
CCDC88C-205ENST00000553403 PLA2G2EQ9NZK7 142 aa21.71■■□□□ 1.07
CCDC88C-205ENST00000553403 PRELID3BQ9Y3B1 194 aa21.71■■□□□ 1.07
CCDC88C-205ENST00000553403 HPRT1P00492 218 aa21.7■■□□□ 1.06
CCDC88C-205ENST00000553403 PPOXP50336 477 aa21.7■■□□□ 1.06
CCDC88C-205ENST00000553403 DYNLT3P51808 116 aa21.7■■□□□ 1.06
CCDC88C-205ENST00000553403 RPL31P62899 125 aaKnown RBP21.7■■□□□ 1.06
CCDC88C-205ENST00000553403 RPL39P5Q59GN2 51 aa21.7■■□□□ 1.06
CCDC88C-205ENST00000553403 H2BFWTQ7Z2G1 175 aa21.7■■□□□ 1.06
CCDC88C-205ENST00000553403 C19orf12Q9NSK7 152 aa21.7■■□□□ 1.06
CCDC88C-205ENST00000553403 HSPB7Q9UBY9 170 aa21.7■■□□□ 1.06
CCDC88C-205ENST00000553403 NFYBP25208 207 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 SULT1A1P50225 295 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 LINC00205P59089 165 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 TNFRSF9Q07011 255 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 HFEQ30201 348 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 UQCC3Q6UW78 93 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 CCDC28AQ8IWP9 274 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 OR5C1Q8NGR4 320 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 PSENENQ9NZ42 101 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 CST7O76096 145 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 FSTL3O95633 263 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 IGHV3-7P01780 117 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 ARHGDIBP52566 201 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 UBE2KP61086 200 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 CLINT1Q14677 625 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 PRAMEF5Q5TYX0 476 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 LYPD2Q6UXB3 125 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 LEAP2Q969E1 77 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 MMP26Q9NRE1 261 aa21.69■■□□□ 1.06
CCDC88C-205ENST00000553403 FAM90A9PA6NNJ1 464 aa21.68■■□□□ 1.06
CCDC88C-205ENST00000553403 FCGR3BO75015 233 aa21.68■■□□□ 1.06
CCDC88C-205ENST00000553403 FCN3O75636 299 aa21.68■■□□□ 1.06
CCDC88C-205ENST00000553403 IAPPP10997 89 aa21.68■■□□□ 1.06
CCDC88C-205ENST00000553403 UTF1Q5T230 341 aa21.68■■□□□ 1.06
CCDC88C-205ENST00000553403 DDB2Q92466 427 aa21.68■■□□□ 1.06
CCDC88C-205ENST00000553403 R3HDM4Q96D70 268 aa21.68■■□□□ 1.06
CCDC88C-205ENST00000553403 ADTRPQ96IZ2 230 aa21.68■■□□□ 1.06
CCDC88C-205ENST00000553403 S1PR3Q99500 378 aa21.68■■□□□ 1.06
CCDC88C-205ENST00000553403 PARP11Q9NR21 331 aa21.68■■□□□ 1.06
CCDC88C-205ENST00000553403 DFFBO76075 338 aa21.67■■□□□ 1.06
CCDC88C-205ENST00000553403 DAOP14920 347 aa21.67■■□□□ 1.06
CCDC88C-205ENST00000553403 THBS3P49746 956 aa21.67■■□□□ 1.06
CCDC88C-205ENST00000553403 RAB5CP51148 216 aa21.67■■□□□ 1.06
CCDC88C-205ENST00000553403 ZNF273Q14593 569 aa21.67■■□□□ 1.06
CCDC88C-205ENST00000553403 IL34Q6ZMJ4 242 aa21.67■■□□□ 1.06
CCDC88C-205ENST00000553403 SLC25A48Q6ZT89 311 aaKnown RBP21.67■■□□□ 1.06
CCDC88C-205ENST00000553403 LINC00052Q96N35 136 aa21.67■■□□□ 1.06
CCDC88C-205ENST00000553403 ZNF714Q96N38 554 aa21.67■■□□□ 1.06
CCDC88C-205ENST00000553403 ATP5SQ99766 215 aa21.67■■□□□ 1.06
CCDC88C-205ENST00000553403 RBKSQ9H477 322 aa21.67■■□□□ 1.06
CCDC88C-205ENST00000553403 MARCH11A6NNE9 402 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 MMP23AO75900 390 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 MRPS11P82912 194 aaKnown RBP21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 C4orf17Q53FE4 359 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 PXDC1Q5TGL8 231 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 TMEM200BQ69YZ2 307 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 HEPN1Q6WQI6 88 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 STPG2Q8N412 459 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 ZNF251Q9BRH9 671 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 CTSZQ9UBR2 303 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 SAA2-SAA4A0A096LPE2 208 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 DANCRP0C864 163 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 SAA2P0DJI9 122 aaPredicted RBP21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 HSD17B11Q8NBQ5 300 aa21.66■■□□□ 1.06
CCDC88C-205ENST00000553403 ARFGEF3Q5TH69 2177 aa21.65■■□□□ 1.06
CCDC88C-205ENST00000553403 A0A1W2PPE3 182 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms