RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ATP6V1FQ16864 119 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 GCSAMLQ5JQS6 135 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 ACTL10Q5JWF8 245 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 TEX38Q6PEX7 206 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF497Q6ZNH5 498 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 TMPRSS7Q7RTY8 843 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 NUFIP2Q7Z417 695 aaKnown RBP4.55□□□□□ -1.68
LIMA1-212ENST00000552491 OR10G9Q8NGN4 311 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 OR10G7Q8NGN6 311 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 WDYHV1Q96HA8 205 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 LURAP1Q96LR2 239 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 ATG101Q9BSB4 218 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 DERL1Q9BUN8 251 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 KRTAP9-9Q9BYP9 154 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 KRTAP9-4Q9BYQ2 154 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 RBM7Q9Y580 266 aaKnown RBP4.55□□□□□ -1.68
LIMA1-212ENST00000552491 MPC1Q9Y5U8 109 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 PTPRBP23467 1997 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 KMT2EQ8IZD2 1858 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 ODAMA1E959 279 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 PGPEP1LA6NFU8 196 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 OR5B21A6NL26 309 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 ANKRD30BLA7E2S9 258 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 GGCTO75223 188 aaKnown RBP4.55□□□□□ -1.68
LIMA1-212ENST00000552491 MT-CO3P00414 261 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 CRYAAP02489 173 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 TFF1P04155 84 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 TYMSP04818 313 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 HOXA6P31267 233 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 CHRNA7P36544 502 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 SRP14P37108 136 aaKnown RBP4.55□□□□□ -1.68
LIMA1-212ENST00000552491 IDH3GP51553 393 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-212ENST00000552491 RAB4BP61018 213 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 ZXDAP98168 799 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF816Q0VGE8 651 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-212ENST00000552491 ACOT6Q3I5F7 207 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-212ENST00000552491 ALKBH6Q3KRA9 238 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 MOB1BQ7L9L4 216 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 TIPARPQ7Z3E1 657 aaKnown RBP4.55□□□□□ -1.68
LIMA1-212ENST00000552491 CISD2Q8N5K1 135 aaKnown RBP4.55□□□□□ -1.68
LIMA1-212ENST00000552491 Q8N7P7 452 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF114Q8NC26 417 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 OR2T10Q8NGZ9 312 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM18Q96B42 140 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 NEU1Q99519 415 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 DDA1Q9BW61 102 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 PKIBQ9C010 78 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 MANBALQ9NQG1 85 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 MBNL3Q9NUK0 354 aaKnown RBP4.55□□□□□ -1.68
LIMA1-212ENST00000552491 PGPEP1Q9NXJ5 209 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 OR6C3Q9NZP0 311 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 HSPB7Q9UBY9 170 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 PILRBQ9UKJ0 227 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 TRAPPC2LQ9UL33 140 aa4.55□□□□□ -1.68
LIMA1-212ENST00000552491 KNTC1P50748 2209 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 TET2Q6N021 2002 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-212ENST00000552491 FAM166BA8MTA8 275 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 RNF212BA8MTL3 300 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 C17orf98A8MV24 154 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 PSPNO60542 156 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 NEURL1O76050 574 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 VENTXO95231 258 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 IGHEP01854 428 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 CD33P20138 364 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 IL3RAP26951 378 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 CCKARP32238 428 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 ARR3P36575 388 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 CYB561P49447 251 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 SPCS3P61009 180 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 RPL15P61313 204 aaKnown RBP4.54□□□□□ -1.68
LIMA1-212ENST00000552491 ERVK11-1P61568 191 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 EIF4EBP1Q13541 118 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-212ENST00000552491 SLC10A1Q14973 349 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 USF2Q15853 346 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF124Q15973 351 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 FFAR4Q5NUL3 377 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM256Q8N2U0 113 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF808Q8N4W9 903 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-212ENST00000552491 NPCDR1Q9BY65 106 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 WASF3Q9UPY6 502 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 J3QT63 122 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 CDIPTO14735 213 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 MLNRO43193 412 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 S1PR2O95136 353 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 CELA3BP08861 270 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 C1QTNF9P0C862 333 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 COX5AP20674 150 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 COL8A1P27658 744 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 MPLP40238 635 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 MAGEA5P43359 124 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 ATP5G3P48201 142 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 GNB1P62873 340 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 LCN2P80188 198 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 PAX5Q02548 391 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 PLP2Q04941 152 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 TRA2AQ13595 282 aaKnown RBP eCLIP4.54□□□□□ -1.68
LIMA1-212ENST00000552491 IQCJQ1A5X6 159 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 FAM78BQ5VT40 261 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 KCNIP4Q6PIL6 250 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 BTNL3Q6UXE8 466 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms