RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 ZNF702PQ9H963 129 aa12.93□□□□□ -0.34
CHMP1A-209ENST00000550872 CCL28Q9NRJ3 127 aa12.93□□□□□ -0.34
CHMP1A-209ENST00000550872 RBMX2Q9Y388 322 aaKnown RBP12.93□□□□□ -0.34
CHMP1A-209ENST00000550872 WASHC3Q9Y3C0 194 aa12.93□□□□□ -0.34
CHMP1A-209ENST00000550872 RNF114Q9Y508 228 aa12.93□□□□□ -0.34
CHMP1A-209ENST00000550872 SH2D7A6NKC9 451 aaPredicted RBP12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 FGF16O43320 207 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 CD3DP04234 171 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 AMY1AP04745 511 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 AMY2AP04746 511 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 DUTP33316 252 aaKnown RBP12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 MMDQ15546 238 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 PYDC2Q56P42 97 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 RNASE10Q5GAN6 216 aaKnown RBP12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 ZNF660Q6AZW8 331 aaPredicted RBP12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 C11orf88Q6PI97 169 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 Q6ZS46 218 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 CCDC190Q86UF4 302 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 TMEM17Q86X19 198 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 C5orf56Q8N8D9 126 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 TMEM229BQ8NBD8 167 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 OR8H1Q8NGG4 311 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 ADTRPQ96IZ2 230 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 RITA1Q96K30 269 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 SLC35D1Q9NTN3 355 aa12.92□□□□□ -0.34
CHMP1A-209ENST00000550872 HAX1O00165 279 aa12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 GSTZ1O43708 216 aaPredicted RBP12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 IFNA6P05013 189 aa12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 F2RL1P55085 397 aa12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 TAS2R19P59542 299 aa12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 RPS16P62249 146 aaKnown RBP12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 TAGLNQ01995 201 aaKnown RBP12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 SPANXN2Q5MJ10 180 aa12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 VAX1Q5SQQ9 334 aa12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 Q8N2B8 174 aa12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 C3orf56Q8N813 242 aa12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 TINAGL1Q9GZM7 467 aaPredicted RBP12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 BATF3Q9NR55 127 aa12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 PLSCR3Q9NRY6 295 aa12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 V9GYH0 126 aa12.91□□□□□ -0.34
CHMP1A-209ENST00000550872 RAB3DO95716 219 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 IGLV2-14P01704 120 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 CSF1P09603 554 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 TBPP20226 339 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 PTBP1P26599 531 aaKnown RBP eCLIP12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 CNTFRP26992 372 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 CBX3Q13185 183 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 RTL8BQ17RB0 113 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 STEAP1BQ6NZ63 245 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 PDPNQ86YL7 162 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 Q8N9W7 124 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 ZBTB34Q8NCN2 500 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 BVESQ8NE79 360 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 MOB3AQ96BX8 217 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 FLYWCH2Q96CP2 140 aaKnown RBP12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 HSD17B10Q99714 261 aaKnown RBP12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 RASL11BQ9BPW5 248 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 TAS2R8Q9NYW2 309 aa12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 ZNF107Q9UII5 783 aaPredicted RBP12.9□□□□□ -0.34
CHMP1A-209ENST00000550872 LINC00473A8K010 186 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 NBR2O15453 112 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 PEX14O75381 377 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 CD74P04233 296 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 RRASP10301 218 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 ETV6P41212 452 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 MSMO1Q15800 293 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 CNPY1Q3B7I2 92 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 KCTD9Q7L273 389 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 MFSD4AQ8N468 514 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 BORCS5Q969J3 196 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 RNF5Q99942 180 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 THAP7Q9BT49 309 aaPredicted RBP12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 LIN7CQ9NUP9 197 aaKnown RBP12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 KIAA1456Q9P272 454 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 PRELID3BQ9Y3B1 194 aa12.89□□□□□ -0.35
CHMP1A-209ENST00000550872 TNFSF12O43508 249 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 IGKV1-16P04430 117 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 GNRHRP30968 328 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 VDAC2P45880 294 aaPredicted RBP12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 PROK1P58294 105 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 RPL30P62888 115 aaKnown RBP12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 ZNF79Q15937 498 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 ZNF66Q6ZN08 573 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 ZNF818PQ6ZRF7 136 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 Q8N402 240 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 ARRDC1Q8N5I2 433 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 NPBQ8NG41 125 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 OR4D10Q8NGI6 311 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 TCTEX1D2Q8WW35 142 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 DDB2Q92466 427 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 GPHA2Q96T91 129 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 TSNAXQ99598 290 aaKnown RBP12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 FXYD6Q9H0Q3 95 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 SERTAD4Q9NUC0 356 aa12.88□□□□□ -0.35
CHMP1A-209ENST00000550872 RRHO14718 337 aa12.87□□□□□ -0.35
CHMP1A-209ENST00000550872 FCGR3BO75015 233 aa12.87□□□□□ -0.35
CHMP1A-209ENST00000550872 AKAIN1P0CW23 69 aa12.87□□□□□ -0.35
CHMP1A-209ENST00000550872 EIF4EBP1Q13541 118 aaPredicted RBP12.87□□□□□ -0.35
CHMP1A-209ENST00000550872 MEF2DQ14814 521 aa12.87□□□□□ -0.35
CHMP1A-209ENST00000550872 TMEM95Q3KNT9 176 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms