RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 OR2D2Q9H210 308 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 ZNF230Q9UIE0 474 aaPredicted RBP12.68□□□□□ -0.38
VPS29-207ENST00000549970 SCOCQ9UIL1 159 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 RAB27BO00194 218 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 MFNGO00587 321 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 ATP6V1G2O95670 118 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 OR8U9P0C7N5 309 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 HIST1H1DP16402 221 aaKnown RBP12.67□□□□□ -0.38
VPS29-207ENST00000549970 RAB6AP20340 208 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 UNQ5815/PRO19632Q6UWF5 114 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 PPP1R27Q86WC6 154 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 TCTEX1D1Q8N7M0 179 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 OR10J5Q8NHC4 309 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 CABLES2Q9BTV7 478 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 TPSG1Q9NRR2 321 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 SLC35D1Q9NTN3 355 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 NUBP2Q9Y5Y2 271 aa12.67□□□□□ -0.38
VPS29-207ENST00000549970 METTL21EPA6NDL7 271 aa12.66□□□□□ -0.38
VPS29-207ENST00000549970 SLC25A17O43808 307 aa12.66□□□□□ -0.38
VPS29-207ENST00000549970 SPDEFO95238 335 aa12.66□□□□□ -0.38
VPS29-207ENST00000549970 PSMB9P28065 219 aa12.66□□□□□ -0.38
VPS29-207ENST00000549970 ARFRP1Q13795 201 aa12.66□□□□□ -0.38
VPS29-207ENST00000549970 ACTBL2Q562R1 376 aa12.66□□□□□ -0.38
VPS29-207ENST00000549970 NR2C2APQ86WQ0 139 aa12.66□□□□□ -0.38
VPS29-207ENST00000549970 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.66□□□□□ -0.38
VPS29-207ENST00000549970 LFNGQ8NES3 379 aa12.66□□□□□ -0.38
VPS29-207ENST00000549970 FLYWCH2Q96CP2 140 aaKnown RBP12.66□□□□□ -0.38
VPS29-207ENST00000549970 TOLLIPQ9H0E2 274 aa12.66□□□□□ -0.38
VPS29-207ENST00000549970 SDHAF2Q9NX18 166 aa12.66□□□□□ -0.38
VPS29-207ENST00000549970 TRBV6-7A0A0A0MS04 114 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 MRPS14O60783 128 aaKnown RBP12.65□□□□□ -0.38
VPS29-207ENST00000549970 GALP22466 123 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 TALDO1P37837 337 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 SLURP1P55000 103 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 UBE2UQ5VVX9 321 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 ZNF562Q6V9R5 426 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 SPARTQ8N0X7 666 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 GRPEL2Q8TAA5 225 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 DCUN1D4Q92564 292 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 ARPC1AQ92747 370 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 MS4A10Q96PG2 267 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 GINS4Q9BRT9 223 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 ATG5Q9H1Y0 275 aa12.65□□□□□ -0.38
VPS29-207ENST00000549970 ELF5Q9UKW6 265 aaPredicted RBP12.65□□□□□ -0.38
VPS29-207ENST00000549970 RBM7Q9Y580 266 aaKnown RBP12.65□□□□□ -0.38
VPS29-207ENST00000549970 OVOL1O14753 267 aa12.64□□□□□ -0.39
VPS29-207ENST00000549970 IGHV3-11P01762 117 aa12.64□□□□□ -0.39
VPS29-207ENST00000549970 LGALS1P09382 135 aaKnown RBP12.64□□□□□ -0.39
VPS29-207ENST00000549970 TPPP2P59282 170 aa12.64□□□□□ -0.39
VPS29-207ENST00000549970 FXYD3Q14802 87 aa12.64□□□□□ -0.39
VPS29-207ENST00000549970 AKIRIN2Q53H80 203 aa12.64□□□□□ -0.39
VPS29-207ENST00000549970 PYHIN1Q6K0P9 492 aa12.64□□□□□ -0.39
VPS29-207ENST00000549970 C5orf30Q96GV9 206 aa12.64□□□□□ -0.39
VPS29-207ENST00000549970 HARBI1Q96MB7 349 aa12.64□□□□□ -0.39
VPS29-207ENST00000549970 TXNL4BQ9NX01 149 aaKnown RBP12.64□□□□□ -0.39
VPS29-207ENST00000549970 IGHV4OR15-8A0A075B7B6 117 aa12.63□□□□□ -0.39
VPS29-207ENST00000549970 IGKV1D-8A0A087WSZ0 117 aa12.63□□□□□ -0.39
VPS29-207ENST00000549970 A0A087WW49 117 aa12.63□□□□□ -0.39
VPS29-207ENST00000549970 LINC01619G3V211 115 aa12.63□□□□□ -0.39
VPS29-207ENST00000549970 ARPC1BO15143 372 aaKnown RBP12.63□□□□□ -0.39
VPS29-207ENST00000549970 LY86O95711 162 aa12.63□□□□□ -0.39
VPS29-207ENST00000549970 CD40LGP29965 261 aa12.63□□□□□ -0.39
VPS29-207ENST00000549970 DLX4Q92988 240 aaPredicted RBP12.63□□□□□ -0.39
VPS29-207ENST00000549970 Q9H521 79 aa12.63□□□□□ -0.39
VPS29-207ENST00000549970 STUB1Q9UNE7 303 aa12.63□□□□□ -0.39
VPS29-207ENST00000549970 ZNF256Q9Y2P7 627 aaPredicted RBP12.63□□□□□ -0.39
VPS29-207ENST00000549970 LSM4Q9Y4Z0 139 aaKnown RBP12.63□□□□□ -0.39
VPS29-207ENST00000549970 NOTOA8MTQ0 251 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 SHOXO15266 292 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 SAP30O75446 220 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 CNIH1O95406 144 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 DIRAS3O95661 229 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 IGLV2-23P01705 113 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 INSL3P51460 131 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 PJVKQ0ZLH3 352 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 CBX3Q13185 183 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 BVESQ8NE79 360 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 FCGR1BQ92637 280 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 ZNF355PQ9NSJ1 428 aa12.62□□□□□ -0.39
VPS29-207ENST00000549970 HUWE1Q7Z6Z7 4374 aaKnown RBP12.62□□□□□ -0.39
VPS29-207ENST00000549970 SORL1Q92673 2214 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 J3QRK9 145 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 TRGV3P03979 118 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 FGF9P31371 208 aaPredicted RBP12.61□□□□□ -0.39
VPS29-207ENST00000549970 LGALS7P47929 136 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 SSBP2P81877 361 aaPredicted RBP12.61□□□□□ -0.39
VPS29-207ENST00000549970 ARL6IP1Q15041 203 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 SRSF7Q16629 238 aaKnown RBP eCLIP12.61□□□□□ -0.39
VPS29-207ENST00000549970 RTL8BQ17RB0 113 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 CDNFQ49AH0 187 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 ZNF429Q86V71 674 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 H1FOOQ8IZA3 346 aaPredicted RBP12.61□□□□□ -0.39
VPS29-207ENST00000549970 OR5T1Q8NG75 326 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 SLA2Q9H6Q3 261 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 DAPK2Q9UIK4 370 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 SSR3Q9UNL2 185 aa12.61□□□□□ -0.39
VPS29-207ENST00000549970 HSPB1P04792 205 aaKnown RBP12.6□□□□□ -0.39
VPS29-207ENST00000549970 CRYGBP07316 175 aa12.6□□□□□ -0.39
VPS29-207ENST00000549970 DTYMKP23919 212 aa12.6□□□□□ -0.39
VPS29-207ENST00000549970 TMEM177Q53S58 311 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms