RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 FAM169BQ8N8A8 192 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 SLC25A31Q9H0C2 315 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 RBKSQ9H477 322 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 PARP11Q9NR21 331 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 RNF7Q9UBF6 113 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 TRAV3A0A0B4J244 114 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 LYNX1G3V0Z9 82 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 LHBP01229 141 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 SEC11BP0C7V7 166 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 LYNX1P0DP58 116 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 DAOP14920 347 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 ELLP55199 621 aaPredicted RBP9.18□□□□□ -0.94
CUX1-212ENST00000547394 UBE2KP61086 200 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 HAGHQ16775 308 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 MORN2Q502X0 79 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 MRGPRGQ86SM5 289 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 STX12Q86Y82 276 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 IL22RA2Q969J5 263 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 CALYQ9NYX4 217 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 MGST3O14880 152 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 MYOD1P15172 320 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 FGF8P55075 233 aaPredicted RBP9.18□□□□□ -0.94
CUX1-212ENST00000547394 RPL23AP62750 156 aaKnown RBP9.18□□□□□ -0.94
CUX1-212ENST00000547394 PRAMEF5Q5TYX0 476 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 TCF23Q7RTU1 214 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 OR10Z1Q8NGY1 313 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 Q8TCH9 128 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 PLXNB1O43157 2135 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 MALRD1Q5VYJ5 2156 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 UBE2L5PA0A1B0GUS4 154 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 LOXL3P58215 753 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 EIF4EBP1Q13541 118 aaPredicted RBP9.18□□□□□ -0.94
CUX1-212ENST00000547394 IL34Q6ZMJ4 242 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 LILRB2Q8N423 598 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 SFT2D1Q8WV19 159 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 SNX22Q96L94 193 aa9.18□□□□□ -0.94
CUX1-212ENST00000547394 ABCA1O95477 2261 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 A0A1B0GWJ7 208 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 DUXBA0A1W2PPF3 345 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 NDUFA2O43678 99 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 OPN1MWP04001 364 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 OR9G9P0C7N8 305 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 OPN1MW2P0DN77 364 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 OPN1MW3P0DN78 364 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 SNCAP37840 140 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 SULT1A1P50225 295 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 TNFRSF9Q07011 255 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 ZNF266Q14584 549 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 GUK1Q16774 197 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 C17orf58Q2M2W7 97 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 EIF2S3LQ2VIR3 472 aaKnown RBP9.17□□□□□ -0.94
CUX1-212ENST00000547394 UQCC3Q6UW78 93 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 LURAP1Q96LR2 239 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 GAFA1Q96PS6 74 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 ATP5SQ99766 215 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 QTRT1Q9BXR0 403 aaKnown RBP9.17□□□□□ -0.94
CUX1-212ENST00000547394 ACACBO00763 2458 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 UTP20O75691 2785 aaKnown RBP9.17□□□□□ -0.94
CUX1-212ENST00000547394 CELSR1Q9NYQ6 3014 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 MARCH11A6NNE9 402 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 FCN3O75636 299 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 CCL3L1P16619 93 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 TUBG1P23258 451 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 PTAFRP25105 342 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 AKR1D1P51857 326 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 H2BFWTQ7Z2G1 175 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 LINC00518Q8N0U6 118 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 LYG1Q8N1E2 194 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 RND1Q92730 232 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 LSM10Q969L4 123 aaKnown RBP9.17□□□□□ -0.94
CUX1-212ENST00000547394 OR4C12Q96R67 309 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 TUBG2Q9NRH3 451 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 SSUH2Q9Y2M2 353 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 MMP24Q9Y5R2 645 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 FLNCQ14315 2725 aa9.17□□□□□ -0.94
CUX1-212ENST00000547394 MZT1Q08AG7 82 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 CATR1Q13166 79 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 CT45A1Q5HYN5 189 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 LCN15Q6UWW0 184 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 LYPD2Q6UXB3 125 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 SSX7Q7RTT5 188 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 CT45A3Q8NHU0 189 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 IFI27L2Q9H2X8 130 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 MSRB2Q9Y3D2 182 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 ARHGAP32A7KAX9 2087 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 CEBPZOSA8MTT3 80 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 LY6HO94772 140 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 CD5P06127 495 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 DUTP33316 252 aaKnown RBP9.16□□□□□ -0.94
CUX1-212ENST00000547394 RPL35P42766 123 aaKnown RBP9.16□□□□□ -0.94
CUX1-212ENST00000547394 REG1BP48304 166 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 RPS23P62266 143 aaKnown RBP9.16□□□□□ -0.94
CUX1-212ENST00000547394 STUMQ69YW2 141 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 SVBPQ8N300 66 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 CD300LFQ8TDQ1 290 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 R3HDM4Q96D70 268 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 RAB40CQ96S21 281 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 IL19Q9UHD0 177 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 PRELID3BQ9Y3B1 194 aa9.16□□□□□ -0.94
CUX1-212ENST00000547394 CRYBG3Q68DQ2 2970 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms