RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 WDR73Q6P4I2 378 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 FCER1GP30273 86 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 SRIP30626 198 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 NXPH1P58417 271 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 C1orf194Q5T5A4 169 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 TGIF2LYQ8IUE0 185 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 DIRC2Q96SL1 478 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 A0A0U1RQV5 110 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 NGFP01138 241 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 CYYR1Q96J86 154 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 DUSP15Q9H1R2 295 aaPredicted RBP12.21□□□□□ -0.45
LIMS1-215ENST00000544547 ASCL3Q9NQ33 180 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 PSG11Q9UQ72 335 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 LAMTOR2Q9Y2Q5 125 aa12.21□□□□□ -0.45
LIMS1-215ENST00000544547 TMEM250H0YL14 139 aa12.21□□□□□ -0.46
LIMS1-215ENST00000544547 ADH4P08319 380 aa12.21□□□□□ -0.46
LIMS1-215ENST00000544547 LYL1P12980 280 aa12.21□□□□□ -0.46
LIMS1-215ENST00000544547 GNB1P62873 340 aa12.21□□□□□ -0.46
LIMS1-215ENST00000544547 PSG5Q15238 335 aa12.21□□□□□ -0.46
LIMS1-215ENST00000544547 SPSB3Q6PJ21 355 aa12.21□□□□□ -0.46
LIMS1-215ENST00000544547 WDYHV1Q96HA8 205 aa12.21□□□□□ -0.46
LIMS1-215ENST00000544547 TBL2Q9Y4P3 447 aaKnown RBP12.21□□□□□ -0.46
LIMS1-215ENST00000544547 C1QTNF9P0C862 333 aa12.21□□□□□ -0.46
LIMS1-215ENST00000544547 EPHA8P29322 1005 aaPredicted RBP12.21□□□□□ -0.46
LIMS1-215ENST00000544547 GNG3P63215 75 aa12.21□□□□□ -0.46
LIMS1-215ENST00000544547 HGFACQ04756 655 aa12.21□□□□□ -0.46
LIMS1-215ENST00000544547 SMIM21Q3B7S5 101 aa12.21□□□□□ -0.46
LIMS1-215ENST00000544547 H0Y980 276 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 K7EQM0 130 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 MT-CO3P00414 261 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 ARL16Q0P5N6 197 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 PLPPR5Q32ZL2 321 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 SAPCD1Q5SSQ6 148 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 C18orf12Q96KH6 178 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 HELTA6NFD8 242 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 EPOPA6NHQ4 379 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 TRA2AQ13595 282 aaKnown RBP eCLIP12.2□□□□□ -0.46
LIMS1-215ENST00000544547 SLC25A47Q6Q0C1 308 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 SFRP2Q96HF1 295 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 LPAR2Q9HBW0 351 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 PLA2G2EQ9NZK7 142 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 UQCRFS1P47985 274 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 RTL8BQ17RB0 113 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 ZNF581Q9P0T4 197 aa12.2□□□□□ -0.46
LIMS1-215ENST00000544547 DPRXA6NFQ7 191 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 WIPF3A6NGB9 483 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 LINC00271P0C7V0 271 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 ALKBH6Q3KRA9 238 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 ANKRD37Q7Z713 158 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 GSX1Q9H4S2 264 aaPredicted RBP12.19□□□□□ -0.46
LIMS1-215ENST00000544547 TMEM265A0A087WTH1 108 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 TOX3O15405 576 aaPredicted RBP12.19□□□□□ -0.46
LIMS1-215ENST00000544547 ADMP35318 185 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 MFAP2P55001 183 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 GNB2P62879 340 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 ERHP84090 104 aaKnown RBP12.19□□□□□ -0.46
LIMS1-215ENST00000544547 FGFRL1Q8N441 504 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 GBGT1Q8N5D6 347 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 OR2D3Q8NGH3 330 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 ZIC3O60481 467 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 APCSP02743 223 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 ATP5G3P48201 142 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 RHOBP62745 196 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 RHBDD2Q6NTF9 364 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 R3HDM4Q96D70 268 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 C5orf63A6NC05 138 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 SPRY3O43610 288 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 GDF9O60383 454 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 TAS2R45P59539 299 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 KHDC1LQ5JSQ8 128 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 UNQ5815/PRO19632Q6UWF5 114 aa12.19□□□□□ -0.46
LIMS1-215ENST00000544547 HSD17B10Q99714 261 aaKnown RBP12.19□□□□□ -0.46
LIMS1-215ENST00000544547 QTRT1Q9BXR0 403 aaKnown RBP12.19□□□□□ -0.46
LIMS1-215ENST00000544547 CADP27708 2225 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 HELZP42694 1942 aaKnown RBP12.18□□□□□ -0.46
LIMS1-215ENST00000544547 QRFPP83859 136 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 MRGPRDQ8TDS7 321 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 C10orf35Q96D05 121 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 GNB4Q9HAV0 340 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 PLXNA4Q9HCM2 1894 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 THSD7BQ9C0I4 1608 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 CT45A10P0DMU9 189 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 OR10D3Q8NH80 312 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 RNF2Q99496 336 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 TAAR3PQ9P1P4 343 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 ALPK3Q96L96 1907 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 LDLRAD2Q5SZI1 272 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 OR4D5Q8NGN0 318 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 FBLN5Q9UBX5 448 aa12.18□□□□□ -0.46
LIMS1-215ENST00000544547 IGKV1D-13A0A0B4J2D9 117 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 A0A1B0GWJ7 208 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 IFITM10A6NMD0 228 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 IFNL4K9M1U5 179 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 ZG16O60844 167 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 NAPSAO96009 420 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 IGKV1-13P0DP09 117 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 RELQ04864 619 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-215ENST00000544547 ZNF766Q5HY98 468 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 TMEM251Q8N6I4 163 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 TM2D1Q9BX74 207 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms