RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 COLCA2A8K830 154 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 GYPAP02724 150 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 CRYBA1P05813 215 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 SELLP14151 372 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 SSTR5P35346 364 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 RAB5CP51148 216 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 CR1LQ2VPA4 569 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 SPSB3Q6PJ21 355 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 ZNF788Q6ZQV5 615 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 COMMD1Q8N668 190 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 GAFA1Q96PS6 74 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 RARRES2Q99969 163 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 SLC25A31Q9H0C2 315 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 TOLLIPQ9H0E2 274 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 KCNS2Q9ULS6 477 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 ADGRG4Q8IZF6 3080 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 NBEAQ8NFP9 2946 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 C15orf65H3BRN8 121 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 TMEM178BH3BS89 294 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 IGKV1-5P01602 117 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 C1orf87Q8N0U7 546 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 ZFP82Q8N141 532 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 OR52L2PQ8NGH6 319 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 C2CD4CQ8TF44 421 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 CCL13Q99616 98 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 NCOR1P1Q9H4R4 102 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 TMEM106BQ9NUM4 274 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 HIVEP3Q5T1R4 2406 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 RELNP78509 3460 aa11.87□□□□□ -0.51
VPS33A-209ENST00000544349 WRBO00258 174 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 SERPINE2P07093 398 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 GZMHP20718 246 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 PEA15Q15121 130 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 DUX4L9Q6RFH8 374 aaPredicted RBP11.86□□□□□ -0.51
VPS33A-209ENST00000544349 CCL17Q92583 94 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 C5orf30Q96GV9 206 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 FAM234AQ9H0X4 552 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 CACNG5Q9UF02 275 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 RBM7Q9Y580 266 aaKnown RBP11.86□□□□□ -0.51
VPS33A-209ENST00000544349 TANC2Q9HCD6 1990 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 PPIAL4EA0A075B759 164 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 TRAV38-1A0A0B4J264 116 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 UMAD1C9J7I0 102 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 PPIAL4DF5H284 164 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 SNRNP70P08621 437 aaKnown RBP11.86□□□□□ -0.51
VPS33A-209ENST00000544349 PPIAL4FP0DN26 164 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 DAOP14920 347 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 EDDM3BP56851 147 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 BAXQ07812 192 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 ZNF585BQ52M93 769 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 C14orf79Q96F83 325 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 RPS10P5Q9NQ39 176 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 PPIAL4AQ9Y536 164 aa11.86□□□□□ -0.51
VPS33A-209ENST00000544349 SPINT2O43291 252 aa11.85□□□□□ -0.51
VPS33A-209ENST00000544349 OR13C7P0DN81 318 aa11.85□□□□□ -0.51
VPS33A-209ENST00000544349 IAPPP10997 89 aa11.85□□□□□ -0.51
VPS33A-209ENST00000544349 MMP9P14780 707 aa11.85□□□□□ -0.51
VPS33A-209ENST00000544349 ZNF16P17020 682 aaPredicted RBP11.85□□□□□ -0.51
VPS33A-209ENST00000544349 S100GP29377 79 aa11.85□□□□□ -0.51
VPS33A-209ENST00000544349 HTD2P86397 168 aa11.85□□□□□ -0.51
VPS33A-209ENST00000544349 AVPI1Q5T686 147 aa11.85□□□□□ -0.51
VPS33A-209ENST00000544349 FAM216BQ8N7L0 139 aa11.85□□□□□ -0.51
VPS33A-209ENST00000544349 RNASE11Q8TAA1 199 aaKnown RBP11.85□□□□□ -0.51
VPS33A-209ENST00000544349 RFESDQ8TAC1 157 aa11.85□□□□□ -0.51
VPS33A-209ENST00000544349 ATP5SQ99766 215 aa11.85□□□□□ -0.51
VPS33A-209ENST00000544349 KLF2Q9Y5W3 355 aaPredicted RBP11.85□□□□□ -0.51
VPS33A-209ENST00000544349 PKDREJQ9NTG1 2253 aa11.85□□□□□ -0.51
VPS33A-209ENST00000544349 C7orf77A4D0Y5 90 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 TXNL1O43396 289 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 WNT2P09544 360 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 RAB13P51153 203 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 DRAM1Q8N682 238 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 NINJ1Q92982 152 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 ISOC2Q96AB3 205 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 OR6C3Q9NZP0 311 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 DSCAML1Q8TD84 2053 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 A0A1B0GU03 582 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 M0R036 132 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 CGB3P0DN86 165 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 CGB7P0DN87 165 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 HAPLN4Q86UW8 402 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 HIST1H2BAQ96A08 127 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 SMCO4Q9NRQ5 59 aa11.84□□□□□ -0.51
VPS33A-209ENST00000544349 IGHV3-43A0A0B4J1X8 118 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 IGHV1-69-2A0A0G2JMI3 117 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 A0A1W2PPH5 198 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 NKX6-3A6NJ46 265 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 TMPRSS2O15393 492 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 IGHV3-43DP0DP04 118 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 ARL16Q0P5N6 197 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 SP5Q6BEB4 398 aaPredicted RBP11.83□□□□□ -0.52
VPS33A-209ENST00000544349 LFNGQ8NES3 379 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 SLC35B3Q9H1N7 401 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 USP24Q9UPU5 2620 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 TNFRSF13BO14836 293 aaPredicted RBP11.83□□□□□ -0.52
VPS33A-209ENST00000544349 SULT1A1P50225 295 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 PPOXP50336 477 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 HABP2Q14520 560 aaPredicted RBP11.83□□□□□ -0.52
VPS33A-209ENST00000544349 LINC00518Q8N0U6 118 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 CD300LFQ8TDQ1 290 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms