RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 VAX1Q5SQQ9 334 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 SPINT1O43278 529 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 CNTRLQ7Z7A1 2325 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 hCG_38984A0A1B0GV85 526 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 GPX1P07203 203 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 GEMIN7Q9H840 131 aaKnown RBP13.31□□□□□ -0.28
CHD4-210ENST00000544040 MOSPD3O75425 235 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 DNAL4O96015 105 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 FAM106CPP0CH98 169 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 PMS2CLQ68D20 193 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 AMELYQ99218 206 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 MRPL16Q9NX20 251 aaKnown RBP13.31□□□□□ -0.28
CHD4-210ENST00000544040 HAX1O00165 279 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 PEAR1Q5VY43 1037 aaPredicted RBP13.31□□□□□ -0.28
CHD4-210ENST00000544040 CHRNA10Q9GZZ6 450 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 ALX4Q9H161 411 aaPredicted RBP13.31□□□□□ -0.28
CHD4-210ENST00000544040 LY6EQ16553 131 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 Q5PR19 223 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 LINC00518Q8N0U6 118 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 FADS6Q8N9I5 356 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 APCDD1LQ8NCL9 501 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 ITLN1Q8WWA0 313 aa13.31□□□□□ -0.28
CHD4-210ENST00000544040 IGHV3-35A0A0C4DH35 117 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 PATE3B3GLJ2 98 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 CD160O95971 181 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 SFRP2Q96HF1 295 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 C14orf144Q96I85 54 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 TRBV5-3A0A0A0MS03 114 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 RELQ04864 619 aaPredicted RBP13.3□□□□□ -0.28
CHD4-210ENST00000544040 LILRA6Q6PI73 481 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 NUDT10Q8NFP7 164 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 NUDT11Q96G61 164 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 GPR132Q9UNW8 380 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 IL9P15248 144 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 CDX1P47902 265 aaPredicted RBP13.3□□□□□ -0.28
CHD4-210ENST00000544040 DMRTA1Q5VZB9 504 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 CHODLQ9H9P2 273 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 TAF1P21675 1872 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 A0A0U1RQV5 110 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 A0A1W2PS18 150 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 SNAI3Q3KNW1 292 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 DNAJC4Q9NNZ3 241 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 MUC21A0A0G2JKD1 596 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 A0A0J9YW62 118 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 MUC21A0A140T8X8 626 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 ITGBL1O95965 494 aaPredicted RBP13.3□□□□□ -0.28
CHD4-210ENST00000544040 IGHV3-23P01764 117 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 CBLN1P23435 193 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 HIST1H1AQ02539 215 aaPredicted RBP13.3□□□□□ -0.28
CHD4-210ENST00000544040 MUC21Q5SSG8 566 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 WNT9BO14905 357 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 SUMO2P61956 95 aaKnown RBP13.3□□□□□ -0.28
CHD4-210ENST00000544040 DUX5Q96PT3 197 aa13.3□□□□□ -0.28
CHD4-210ENST00000544040 LAMB1P07942 1786 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 MYO5AQ9Y4I1 1855 aaKnown RBP13.29□□□□□ -0.28
CHD4-210ENST00000544040 MGST3O14880 152 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 RECKO95980 971 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 PSG9Q00887 426 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 ABHD12Q8N2K0 398 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 TMEM171Q8WVE6 324 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 TRBV20OR9-2A0A075B6H5 130 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 IGHV3-66A0A0C4DH42 116 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 SPAARA0A1B0GVQ0 90 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 TMEM170BQ5T4T1 132 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 GOLT1AQ6ZVE7 132 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 A1L4Q6 167 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 S1PR2O95136 353 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 THY1P04216 161 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 MPV17P39210 176 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 GZMMP51124 257 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 TMEM95Q3KNT9 176 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 TMEM70Q9BUB7 260 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 SF3B6Q9Y3B4 125 aaKnown RBP13.29□□□□□ -0.28
CHD4-210ENST00000544040 ISXQ2M1V0 245 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 MMD2Q8IY49 270 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 FOXA3P55318 350 aaPredicted RBP13.29□□□□□ -0.28
CHD4-210ENST00000544040 DCAF10Q5QP82 559 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 GALNT14Q96FL9 552 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 KCNS1Q96KK3 526 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 DMRT1Q9Y5R6 373 aa13.29□□□□□ -0.28
CHD4-210ENST00000544040 NINQ8N4C6 2090 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 CALYQ9NYX4 217 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 FOXI3A8MTJ6 420 aaPredicted RBP13.28□□□□□ -0.28
CHD4-210ENST00000544040 ASAH2BP0C7U1 165 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 Q5BKY6 102 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 C1orf185Q5T7R7 199 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 HIST1H2BAQ96A08 127 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 IGHV3OR16-13A0A075B7E8 117 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 IGHV3OR16-10A0A075B7F0 116 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 IGHV3-74A0A0B4J1X5 117 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 C1QTNF9BB2RNN3 333 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 NPFFO15130 113 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 H2BFSP57053 126 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 MRPS18AQ9NVS2 196 aaKnown RBP13.28□□□□□ -0.28
CHD4-210ENST00000544040 C9JCJ5 164 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 ISG15P05161 165 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 C8orf88P0DMB2 117 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 TCF24Q7RTU0 167 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 OR11H4Q8NGC9 324 aa13.28□□□□□ -0.28
CHD4-210ENST00000544040 MRPS16Q9Y3D3 137 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms