RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 OR5AN1Q8NGI8 311 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 ADTRPQ96IZ2 230 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 HSD17B10Q99714 261 aaKnown RBP13.74□□□□□ -0.21
LIG1-204ENST00000542460 C7orf50Q9BRJ6 194 aaKnown RBP13.74□□□□□ -0.21
LIG1-204ENST00000542460 RSRP1Q9BUV0 290 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 TNFRSF19Q9NS68 423 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 VPREB3Q9UKI3 123 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 TCF19Q9Y242 345 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 CUBNO60494 3623 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 LINC00854A0A1B0GVQ3 168 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 VENTXO95231 258 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 IGKV1D-33P01593 117 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 IGKV1-33P01594 117 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 TAGLNQ01995 201 aaKnown RBP13.74□□□□□ -0.21
LIG1-204ENST00000542460 EBI3Q14213 229 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 HES1Q14469 280 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 LY6EQ16553 131 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 GLDNQ6ZMI3 551 aaPredicted RBP13.74□□□□□ -0.21
LIG1-204ENST00000542460 ZNF66Q6ZN08 573 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 DUX5Q96PT3 197 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 CHIAQ9BZP6 476 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 H0YJW9 148 aa13.73□□□□□ -0.21
LIG1-204ENST00000542460 GPR31O00270 319 aa13.73□□□□□ -0.21
LIG1-204ENST00000542460 UPK1BO75841 260 aa13.73□□□□□ -0.21
LIG1-204ENST00000542460 PGAM2P15259 253 aa13.73□□□□□ -0.21
LIG1-204ENST00000542460 LINC00205P59089 165 aa13.73□□□□□ -0.21
LIG1-204ENST00000542460 EIF4EBP1Q13541 118 aaPredicted RBP13.73□□□□□ -0.21
LIG1-204ENST00000542460 SURF2Q15527 256 aaPredicted RBP13.73□□□□□ -0.21
LIG1-204ENST00000542460 LIAT1Q6ZQX7 453 aa13.73□□□□□ -0.21
LIG1-204ENST00000542460 OR2T10Q8NGZ9 312 aa13.73□□□□□ -0.21
LIG1-204ENST00000542460 ZFAND1Q8TCF1 268 aa13.73□□□□□ -0.21
LIG1-204ENST00000542460 MRGPRFQ96AM1 343 aa13.73□□□□□ -0.21
LIG1-204ENST00000542460 ZNF486Q96H40 463 aaPredicted RBP13.73□□□□□ -0.21
LIG1-204ENST00000542460 A6NDX4 124 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 LINC00473A8K010 186 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 TNFSF12O43508 249 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 MOSP00540 346 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 APOA2P02652 100 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 RNASE1P07998 156 aaKnown RBP13.72□□□□□ -0.21
LIG1-204ENST00000542460 S100GP29377 79 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 UBA52P62987 128 aaKnown RBP13.72□□□□□ -0.21
LIG1-204ENST00000542460 CCBE1Q6UXH8 406 aaPredicted RBP13.72□□□□□ -0.21
LIG1-204ENST00000542460 KCTD9Q7L273 389 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 OR13C8Q8NGS7 320 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 MARCH1Q8TCQ1 289 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 EAF1Q96JC9 268 aaPredicted RBP13.72□□□□□ -0.21
LIG1-204ENST00000542460 SCGB3A2Q96PL1 93 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 PRELID3BQ9Y3B1 194 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 WASHC3Q9Y3C0 194 aa13.72□□□□□ -0.21
LIG1-204ENST00000542460 H7C2Y5 167 aa13.71□□□□□ -0.21
LIG1-204ENST00000542460 TRIM77I1YAP6 450 aa13.71□□□□□ -0.21
LIG1-204ENST00000542460 PLA2G10O15496 165 aa13.71□□□□□ -0.21
LIG1-204ENST00000542460 PGLYRP1O75594 196 aaPredicted RBP13.71□□□□□ -0.21
LIG1-204ENST00000542460 RPL30P62888 115 aaKnown RBP13.71□□□□□ -0.21
LIG1-204ENST00000542460 C16orf87Q6PH81 154 aa13.71□□□□□ -0.21
LIG1-204ENST00000542460 TCTEX1D2Q8WW35 142 aa13.71□□□□□ -0.21
LIG1-204ENST00000542460 DDB2Q92466 427 aa13.71□□□□□ -0.21
LIG1-204ENST00000542460 RAB18Q9NP72 206 aa13.71□□□□□ -0.21
LIG1-204ENST00000542460 SLC35D1Q9NTN3 355 aa13.71□□□□□ -0.21
LIG1-204ENST00000542460 RRASP10301 218 aa13.7□□□□□ -0.22
LIG1-204ENST00000542460 TMEM11P17152 192 aa13.7□□□□□ -0.22
LIG1-204ENST00000542460 CATR1Q13166 79 aa13.7□□□□□ -0.22
LIG1-204ENST00000542460 HNF4GQ14541 408 aa13.7□□□□□ -0.22
LIG1-204ENST00000542460 RTL8BQ17RB0 113 aa13.7□□□□□ -0.22
LIG1-204ENST00000542460 ABCA11PQ4W5N1 156 aa13.7□□□□□ -0.22
LIG1-204ENST00000542460 PHLDA2Q53GA4 152 aa13.7□□□□□ -0.22
LIG1-204ENST00000542460 TMEM219Q86XT9 240 aa13.7□□□□□ -0.22
LIG1-204ENST00000542460 PDPNQ86YL7 162 aa13.7□□□□□ -0.22
LIG1-204ENST00000542460 RBM14Q96PK6 669 aaKnown RBP13.7□□□□□ -0.22
LIG1-204ENST00000542460 GPHA2Q96T91 129 aa13.7□□□□□ -0.22
LIG1-204ENST00000542460 GPR132Q9UNW8 380 aa13.7□□□□□ -0.22
LIG1-204ENST00000542460 RNF212BA8MTL3 300 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 LYRM1O43325 122 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 OR2F2O95006 317 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 CTSDP07339 412 aaPredicted RBP13.69□□□□□ -0.22
LIG1-204ENST00000542460 CBX3Q13185 183 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 FBLN7Q53RD9 439 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 C16orf82Q7Z2V1 217 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 Q8N6K4 173 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 SLC25A21Q9BQT8 299 aaPredicted RBP13.69□□□□□ -0.22
LIG1-204ENST00000542460 SLC2A9Q9NRM0 540 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 C14orf166Q9Y224 244 aaKnown RBP13.69□□□□□ -0.22
LIG1-204ENST00000542460 GPR137BO60478 399 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 IGKV1-16P04430 117 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 RLN1P04808 185 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 PI3P19957 117 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 KIR2DS2P43631 304 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 PIGPP57054 158 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 RND3P61587 244 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 IFITM3Q01628 133 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 OR8H1Q8NGG4 311 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 OR4C13Q8NGP0 309 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 FLYWCH2Q96CP2 140 aaKnown RBP13.69□□□□□ -0.22
LIG1-204ENST00000542460 RBMXL1Q96E39 390 aaKnown RBP13.69□□□□□ -0.22
LIG1-204ENST00000542460 RNF5Q99942 180 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 SLC25A33Q9BSK2 321 aa13.69□□□□□ -0.22
LIG1-204ENST00000542460 FCGR3BO75015 233 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 BTCP35070 178 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 CCR6P51684 374 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 RPL15P61313 204 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 678.8 ms