RNA–Protein interactions for RNA: ENST00000540891.1

CD9-209, Transcript of CD9 molecule, humanhuman

TSL 3

Gene CD9, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-209ENST00000540891 ANAPC10Q9UM13 185 aa13.26□□□□□ -0.29
CD9-209ENST00000540891 LINC00473A8K010 186 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 FCN1O00602 326 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 ATP6V0E1O15342 81 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 HPGDSO60760 199 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 APOA1P02647 267 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 APOA2P02652 100 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 DUTP33316 252 aaKnown RBP13.25□□□□□ -0.29
CD9-209ENST00000540891 THBS3P49746 956 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 LUMP51884 338 aaPredicted RBP13.25□□□□□ -0.29
CD9-209ENST00000540891 C18orf65Q6ZTR6 163 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 COMMD1Q8N668 190 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 ZNF645Q8N7E2 425 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 FLYWCH2Q96CP2 140 aaKnown RBP13.25□□□□□ -0.29
CD9-209ENST00000540891 OR51J1Q9H342 316 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 FBXO7Q9Y3I1 522 aa13.25□□□□□ -0.29
CD9-209ENST00000540891 IGLV2-23P01705 113 aa13.24□□□□□ -0.29
CD9-209ENST00000540891 ELK1P19419 428 aa13.24□□□□□ -0.29
CD9-209ENST00000540891 PPIFP30405 207 aaKnown RBP13.24□□□□□ -0.29
CD9-209ENST00000540891 CBX5P45973 191 aa13.24□□□□□ -0.29
CD9-209ENST00000540891 ARPC4P59998 168 aa13.24□□□□□ -0.29
CD9-209ENST00000540891 RPS16P62249 146 aaKnown RBP13.24□□□□□ -0.29
CD9-209ENST00000540891 RPL23AP62750 156 aaKnown RBP13.24□□□□□ -0.29
CD9-209ENST00000540891 SPCS2Q15005 226 aa13.24□□□□□ -0.29
CD9-209ENST00000540891 KHDC1LQ5JSQ8 128 aa13.24□□□□□ -0.29
CD9-209ENST00000540891 TEX38Q6PEX7 206 aa13.24□□□□□ -0.29
CD9-209ENST00000540891 LCNL1Q6ZST4 164 aa13.24□□□□□ -0.29
CD9-209ENST00000540891 BVESQ8NE79 360 aa13.24□□□□□ -0.29
CD9-209ENST00000540891 PARP11Q9NR21 331 aa13.24□□□□□ -0.29
CD9-209ENST00000540891 TPSG1Q9NRR2 321 aa13.24□□□□□ -0.29
CD9-209ENST00000540891 METTL1Q9UBP6 276 aaKnown RBP13.24□□□□□ -0.29
CD9-209ENST00000540891 G3V318 75 aa13.23□□□□□ -0.29
CD9-209ENST00000540891 SPDEFO95238 335 aa13.23□□□□□ -0.29
CD9-209ENST00000540891 ZNF182P17025 639 aaPredicted RBP13.23□□□□□ -0.29
CD9-209ENST00000540891 VDAC1P21796 283 aa13.23□□□□□ -0.29
CD9-209ENST00000540891 FCGR2CP31995 323 aa13.23□□□□□ -0.29
CD9-209ENST00000540891 CX3CL1P78423 397 aa13.23□□□□□ -0.29
CD9-209ENST00000540891 EIF4EBP1Q13541 118 aaPredicted RBP13.23□□□□□ -0.29
CD9-209ENST00000540891 TMEM177Q53S58 311 aa13.23□□□□□ -0.29
CD9-209ENST00000540891 C19orf54Q5BKX5 351 aa13.23□□□□□ -0.29
CD9-209ENST00000540891 CLVS1Q8IUQ0 354 aaPredicted RBP13.23□□□□□ -0.29
CD9-209ENST00000540891 RNF152Q8N8N0 203 aa13.23□□□□□ -0.29
CD9-209ENST00000540891 OR5AP2Q8NGF4 316 aa13.23□□□□□ -0.29
CD9-209ENST00000540891 TSNAXQ99598 290 aaKnown RBP13.23□□□□□ -0.29
CD9-209ENST00000540891 GON7Q9BXV9 100 aa13.23□□□□□ -0.29
CD9-209ENST00000540891 RBMX2Q9Y388 322 aaKnown RBP13.23□□□□□ -0.29
CD9-209ENST00000540891 WSB1Q9Y6I7 421 aa13.23□□□□□ -0.29
CD9-209ENST00000540891 SRRM4A7MD48 611 aaKnown RBP13.22□□□□□ -0.29
CD9-209ENST00000540891 SLC25A17O43808 307 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 IGHG4P01861 327 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 RPLP1P05386 114 aaKnown RBP13.22□□□□□ -0.29
CD9-209ENST00000540891 CRYGBP07316 175 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 OR5H8P0DN80 308 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 PF4V1P10720 104 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 EGR2P11161 476 aaPredicted RBP13.22□□□□□ -0.29
CD9-209ENST00000540891 NAT1P18440 290 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 AADACP22760 399 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 CRIP2P52943 208 aaPredicted RBP13.22□□□□□ -0.29
CD9-209ENST00000540891 RPL30P62888 115 aaKnown RBP13.22□□□□□ -0.29
CD9-209ENST00000540891 TAGLNQ01995 201 aaKnown RBP13.22□□□□□ -0.29
CD9-209ENST00000540891 FOXE3Q13461 319 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 PLGLAQ15195 96 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 ZNF660Q6AZW8 331 aaPredicted RBP13.22□□□□□ -0.29
CD9-209ENST00000540891 ADTRPQ96IZ2 230 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 CLCC1Q96S66 551 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 ZFP57Q9NU63 452 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 NECAP2Q9NVZ3 263 aa13.22□□□□□ -0.29
CD9-209ENST00000540891 CA2P00918 260 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 PPYP01298 95 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 ELANEP08246 267 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 PSMB8P28062 276 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 PRSS3P35030 304 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 RPL5P46777 297 aaKnown RBP13.21□□□□□ -0.29
CD9-209ENST00000540891 LGALS7P47929 136 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 SSBP2P81877 361 aaPredicted RBP13.21□□□□□ -0.29
CD9-209ENST00000540891 CDK10Q15131 360 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 ETV3LQ6ZN32 361 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 C1QL4Q86Z23 238 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 GPX8Q8TED1 209 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 AP3S1Q92572 193 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 HARBI1Q96MB7 349 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 IFT46Q9NQC8 304 aa13.21□□□□□ -0.29
CD9-209ENST00000540891 MRPS7Q9Y2R9 242 aaKnown RBP13.21□□□□□ -0.29
CD9-209ENST00000540891 MEGF8Q7Z7M0 2845 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 TRAV41A0A0B4J266 112 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 G3V4G9 280 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 PLXNB1O43157 2135 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 SLC22A5O76082 557 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 IGLV1-40P01703 118 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 RRASP10301 218 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 TMBIM6P55061 237 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 RTL8BQ17RB0 113 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 MRGPRG-AS1Q2M3A8 158 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 MZT2AQ6P582 158 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 ZNF562Q6V9R5 426 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 C8orf86Q6ZUL3 223 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 OVCH2Q7RTZ1 564 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 SNX29P2Q8IUI4 249 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 MINDY2Q8NBR6 621 aa13.2□□□□□ -0.3
CD9-209ENST00000540891 WFDC9Q8NEX5 89 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms