RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 GCSAMLQ5JQS6 135 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 FAM53AQ6NSI3 398 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-237ENST00000539504 TOMM20LQ6UXN7 152 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 TCF23Q7RTU1 214 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 OR1L1Q8NH94 360 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 TBX15Q96SF7 602 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 DERL1Q9BUN8 251 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 SELEP16581 610 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 ERVFC1-1P60608 527 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 POM121L2Q96KW2 1035 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 ZDHHC11Q9H8X9 412 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 USF3Q68DE3 2245 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 LRRC30A6NM36 301 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 LTC4SQ16873 150 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 NEU1Q99519 415 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 RTL8AQ9BWD3 113 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 IL17BQ9UHF5 180 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-237ENST00000539504 SH2D1BO14796 132 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 PAX1P15863 534 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 KITLGP21583 273 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 GCH1P30793 250 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 RPL30P62888 115 aaKnown RBP9.48□□□□□ -0.89
SYNE1-237ENST00000539504 OR52L2PQ8NGH6 319 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 STRADBQ9C0K7 418 aa9.48□□□□□ -0.89
SYNE1-237ENST00000539504 F6UZH7 168 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 VENTXO95231 258 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 NPPCP23582 126 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 Q0VFX4 171 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 Q6P435 159 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 TMEM45BQ96B21 275 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 GALMQ96C23 342 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 PARD6GQ9BYG4 376 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-237ENST00000539504 HSPB7Q9UBY9 170 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 MT-CO3P00414 261 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 PDLIM4P50479 330 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 PLGLB1Q02325 96 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 TMPRSS7Q7RTY8 843 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 LINC01551Q86U37 167 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 CXorf67Q86X51 503 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-237ENST00000539504 CMTM2Q8TAZ6 248 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 PLPPR2Q96GM1 343 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 RYDENQ9NUL5 291 aaKnown RBP9.47□□□□□ -0.89
SYNE1-237ENST00000539504 IGHV3-43A0A0B4J1X8 118 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 C17orf98A8MV24 154 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 IGHV3-43DP0DP04 118 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 OR10J1P30954 320 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 THBS3P49746 956 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 GNB1P62873 340 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 LCN2P80188 198 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 NRN1LQ496H8 165 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 DBX2Q6ZNG2 339 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 ZNF497Q6ZNH5 498 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 RFESDQ8TAC1 157 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 HES7Q9BYE0 225 aa9.47□□□□□ -0.89
SYNE1-237ENST00000539504 POLR3KQ9Y2Y1 108 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-237ENST00000539504 DEFB108AA8MXU0 73 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 COX5BP10606 129 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 GABRA2P47869 451 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 GFRA1P56159 465 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 LINC00205P59089 165 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 ZNF90Q03938 601 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 PPP1R32Q7Z5V6 425 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 SCCPDHQ8NBX0 429 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 CIB3Q96Q77 187 aaPredicted RBP9.46□□□□□ -0.89
SYNE1-237ENST00000539504 PKIBQ9C010 78 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 PARD6AQ9NPB6 346 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 B4GALT7Q9UBV7 327 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 POLDIP2Q9Y2S7 368 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 NUPR1O60356 82 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 PDLIM3Q53GG5 364 aaPredicted RBP9.46□□□□□ -0.89
SYNE1-237ENST00000539504 WDYHV1Q96HA8 205 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 IMMP2LQ96T52 175 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 FAM234AQ9H0X4 552 aa9.46□□□□□ -0.89
SYNE1-237ENST00000539504 NPIPB11E5RHQ5 1161 aa9.46□□□□□ -0.9
SYNE1-237ENST00000539504 PDE6DO43924 150 aa9.46□□□□□ -0.9
SYNE1-237ENST00000539504 CENPVQ7Z7K6 275 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-237ENST00000539504 ZNF645Q8N7E2 425 aa9.46□□□□□ -0.9
SYNE1-237ENST00000539504 MRGPRDQ8TDS7 321 aa9.46□□□□□ -0.9
SYNE1-237ENST00000539504 SAMD10Q9BYL1 202 aa9.46□□□□□ -0.9
SYNE1-237ENST00000539504 LINC00470Q9BZP3 86 aa9.46□□□□□ -0.9
SYNE1-237ENST00000539504 TYMSP04818 313 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 MAGEA5P43359 124 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 AESQ08117 197 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 C1orf194Q5T5A4 169 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 BAGE3Q86Y29 109 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 BAGE2Q86Y30 109 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 TPRX1Q8N7U7 411 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 ZNF114Q8NC26 417 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 BTF3L4Q96K17 158 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 PAM16Q9Y3D7 125 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 SFRP2Q96HF1 295 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 MSL2Q9HCI7 577 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 WDFY3Q8IZQ1 3526 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 ADAMTS20P59510 1910 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 TMEM30CPA0ZSE6 113 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 HPRT1P00492 218 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 CBLN1P23435 193 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 ADMP35318 185 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 TGFBR3Q03167 851 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms