RNA–Protein interactions for RNA: ENST00000539320.2

SCARB1-206, Transcript of scavenger receptor class B member 1, humanhuman

TSL 2

Gene SCARB1, Length 720 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-206ENST00000539320 SORL1Q92673 2214 aa17.22■□□□□ 0.35
SCARB1-206ENST00000539320 A0A075B6Q4 140 aa17.21■□□□□ 0.35
SCARB1-206ENST00000539320 RAB27BO00194 218 aa17.21■□□□□ 0.35
SCARB1-206ENST00000539320 BET1O15155 118 aa17.21■□□□□ 0.35
SCARB1-206ENST00000539320 DIRAS3O95661 229 aa17.21■□□□□ 0.35
SCARB1-206ENST00000539320 GNB3P16520 340 aa17.21■□□□□ 0.35
SCARB1-206ENST00000539320 LINC00205P59089 165 aa17.21■□□□□ 0.35
SCARB1-206ENST00000539320 ACTBL2Q562R1 376 aa17.21■□□□□ 0.35
SCARB1-206ENST00000539320 UNQ5815/PRO19632Q6UWF5 114 aa17.21■□□□□ 0.35
SCARB1-206ENST00000539320 CASTOR1Q8WTX7 329 aa17.21■□□□□ 0.35
SCARB1-206ENST00000539320 ALX4Q9H161 411 aaPredicted RBP17.21■□□□□ 0.35
SCARB1-206ENST00000539320 OR2D2Q9H210 308 aa17.21■□□□□ 0.35
SCARB1-206ENST00000539320 SLC35D1Q9NTN3 355 aa17.21■□□□□ 0.35
SCARB1-206ENST00000539320 A0A0B4J203 849 aa17.2■□□□□ 0.34
SCARB1-206ENST00000539320 MRPS14O60783 128 aaKnown RBP17.2■□□□□ 0.34
SCARB1-206ENST00000539320 LGALS1P09382 135 aaKnown RBP17.2■□□□□ 0.34
SCARB1-206ENST00000539320 GALP22466 123 aa17.2■□□□□ 0.34
SCARB1-206ENST00000539320 INSL3P51460 131 aa17.2■□□□□ 0.34
SCARB1-206ENST00000539320 IGSF11Q5DX21 431 aa17.2■□□□□ 0.34
SCARB1-206ENST00000539320 C22orf42Q6IC83 251 aa17.2■□□□□ 0.34
SCARB1-206ENST00000539320 ZNF562Q6V9R5 426 aa17.2■□□□□ 0.34
SCARB1-206ENST00000539320 OR10J5Q8NHC4 309 aa17.2■□□□□ 0.34
SCARB1-206ENST00000539320 MAFIPQ8WZ33 124 aa17.2■□□□□ 0.34
SCARB1-206ENST00000539320 ARPC1AQ92747 370 aa17.2■□□□□ 0.34
SCARB1-206ENST00000539320 FLYWCH2Q96CP2 140 aaKnown RBP17.2■□□□□ 0.34
SCARB1-206ENST00000539320 TPSG1Q9NRR2 321 aa17.2■□□□□ 0.34
SCARB1-206ENST00000539320 TRBV6-7A0A0A0MS04 114 aa17.19■□□□□ 0.34
SCARB1-206ENST00000539320 METTL21EPA6NDL7 271 aa17.19■□□□□ 0.34
SCARB1-206ENST00000539320 LINC01619G3V211 115 aa17.19■□□□□ 0.34
SCARB1-206ENST00000539320 SLC25A17O43808 307 aa17.19■□□□□ 0.34
SCARB1-206ENST00000539320 OR8U9P0C7N5 309 aa17.19■□□□□ 0.34
SCARB1-206ENST00000539320 GSTT2P0CG29 244 aa17.19■□□□□ 0.34
SCARB1-206ENST00000539320 GSTT2BP0CG30 244 aa17.19■□□□□ 0.34
SCARB1-206ENST00000539320 AKIRIN2Q53H80 203 aa17.19■□□□□ 0.34
SCARB1-206ENST00000539320 LFNGQ8NES3 379 aa17.19■□□□□ 0.34
SCARB1-206ENST00000539320 DCUN1D4Q92564 292 aa17.19■□□□□ 0.34
SCARB1-206ENST00000539320 ZNF256Q9Y2P7 627 aaPredicted RBP17.19■□□□□ 0.34
SCARB1-206ENST00000539320 LSM4Q9Y4Z0 139 aaKnown RBP17.19■□□□□ 0.34
SCARB1-206ENST00000539320 OVOL1O14753 267 aa17.18■□□□□ 0.34
SCARB1-206ENST00000539320 SNRPBP14678 240 aaKnown RBP17.18■□□□□ 0.34
SCARB1-206ENST00000539320 ARFRP1Q13795 201 aa17.18■□□□□ 0.34
SCARB1-206ENST00000539320 UBE2UQ5VVX9 321 aa17.18■□□□□ 0.34
SCARB1-206ENST00000539320 GRPEL2Q8TAA5 225 aa17.18■□□□□ 0.34
SCARB1-206ENST00000539320 SDHAF2Q9NX18 166 aa17.18■□□□□ 0.34
SCARB1-206ENST00000539320 ZNF230Q9UIE0 474 aaPredicted RBP17.18■□□□□ 0.34
SCARB1-206ENST00000539320 COL7A1Q02388 2944 aa17.18■□□□□ 0.34
SCARB1-206ENST00000539320 PSMB9P28065 219 aa17.17■□□□□ 0.34
SCARB1-206ENST00000539320 CD40LGP29965 261 aa17.17■□□□□ 0.34
SCARB1-206ENST00000539320 TALDO1P37837 337 aa17.17■□□□□ 0.34
SCARB1-206ENST00000539320 SLURP1P55000 103 aa17.17■□□□□ 0.34
SCARB1-206ENST00000539320 TPPP2P59282 170 aa17.17■□□□□ 0.34
SCARB1-206ENST00000539320 FXYD3Q14802 87 aa17.17■□□□□ 0.34
SCARB1-206ENST00000539320 NR2C2APQ86WQ0 139 aa17.17■□□□□ 0.34
SCARB1-206ENST00000539320 C5orf30Q96GV9 206 aa17.17■□□□□ 0.34
SCARB1-206ENST00000539320 HARBI1Q96MB7 349 aa17.17■□□□□ 0.34
SCARB1-206ENST00000539320 GINS4Q9BRT9 223 aa17.17■□□□□ 0.34
SCARB1-206ENST00000539320 IGHV4OR15-8A0A075B7B6 117 aa17.16■□□□□ 0.34
SCARB1-206ENST00000539320 A0A087WW49 117 aa17.16■□□□□ 0.34
SCARB1-206ENST00000539320 SMIM30A4D0T7 59 aa17.16■□□□□ 0.34
SCARB1-206ENST00000539320 LY86O95711 162 aa17.16■□□□□ 0.34
SCARB1-206ENST00000539320 IGHV3-11P01762 117 aa17.16■□□□□ 0.34
SCARB1-206ENST00000539320 CBX3Q13185 183 aa17.16■□□□□ 0.34
SCARB1-206ENST00000539320 Q6ZS49 121 aa17.16■□□□□ 0.34
SCARB1-206ENST00000539320 ZNF429Q86V71 674 aa17.16■□□□□ 0.34
SCARB1-206ENST00000539320 DLX4Q92988 240 aaPredicted RBP17.16■□□□□ 0.34
SCARB1-206ENST00000539320 MS4A10Q96PG2 267 aa17.16■□□□□ 0.34
SCARB1-206ENST00000539320 SLA2Q9H6Q3 261 aa17.16■□□□□ 0.34
SCARB1-206ENST00000539320 RBM7Q9Y580 266 aaKnown RBP17.16■□□□□ 0.34
SCARB1-206ENST00000539320 ARPC1BO15143 372 aaKnown RBP17.15■□□□□ 0.34
SCARB1-206ENST00000539320 IGLV2-23P01705 113 aa17.15■□□□□ 0.34
SCARB1-206ENST00000539320 LGALS7P47929 136 aa17.15■□□□□ 0.34
SCARB1-206ENST00000539320 TAGLNQ01995 201 aaKnown RBP17.15■□□□□ 0.34
SCARB1-206ENST00000539320 ARL6IP1Q15041 203 aa17.15■□□□□ 0.34
SCARB1-206ENST00000539320 SRSF7Q16629 238 aaKnown RBP eCLIP17.15■□□□□ 0.343e-6■■■■□ 20.4
SCARB1-206ENST00000539320 SPARTQ8N0X7 666 aa17.15■□□□□ 0.34
SCARB1-206ENST00000539320 FCGR1BQ92637 280 aa17.15■□□□□ 0.34
SCARB1-206ENST00000539320 CENPOQ9BU64 300 aa17.15■□□□□ 0.34
SCARB1-206ENST00000539320 ATG5Q9H1Y0 275 aa17.15■□□□□ 0.34
SCARB1-206ENST00000539320 Q9H521 79 aa17.15■□□□□ 0.34
SCARB1-206ENST00000539320 NOTOA8MTQ0 251 aa17.14■□□□□ 0.33
SCARB1-206ENST00000539320 SAP30O75446 220 aa17.14■□□□□ 0.33
SCARB1-206ENST00000539320 TRGV3P03979 118 aa17.14■□□□□ 0.33
SCARB1-206ENST00000539320 DTYMKP23919 212 aa17.14■□□□□ 0.33
SCARB1-206ENST00000539320 FGF9P31371 208 aaPredicted RBP17.14■□□□□ 0.33
SCARB1-206ENST00000539320 SSBP2P81877 361 aaPredicted RBP17.14■□□□□ 0.33
SCARB1-206ENST00000539320 RTL8BQ17RB0 113 aa17.14■□□□□ 0.33
SCARB1-206ENST00000539320 POC5Q8NA72 575 aa17.14■□□□□ 0.33
SCARB1-206ENST00000539320 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.14■□□□□ 0.33
SCARB1-206ENST00000539320 TXNL4BQ9NX01 149 aaKnown RBP17.14■□□□□ 0.33
SCARB1-206ENST00000539320 STUB1Q9UNE7 303 aa17.14■□□□□ 0.33
SCARB1-206ENST00000539320 H3BUA1 57 aa17.13■□□□□ 0.33
SCARB1-206ENST00000539320 CNIH1O95406 144 aa17.13■□□□□ 0.33
SCARB1-206ENST00000539320 NHLRC4P0CG21 123 aaPredicted RBP17.13■□□□□ 0.33
SCARB1-206ENST00000539320 TMEM177Q53S58 311 aa17.13■□□□□ 0.33
SCARB1-206ENST00000539320 H1FOOQ8IZA3 346 aaPredicted RBP17.13■□□□□ 0.33
SCARB1-206ENST00000539320 BVESQ8NE79 360 aa17.13■□□□□ 0.33
SCARB1-206ENST00000539320 RHOVQ96L33 236 aa17.13■□□□□ 0.33
SCARB1-206ENST00000539320 WWC2-AS2Q96NR7 200 aa17.13■□□□□ 0.33
SCARB1-206ENST00000539320 TNCP24821 2201 aa17.12■□□□□ 0.33
SCARB1-206ENST00000539320 IGKV1D-8A0A087WSZ0 117 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms