RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 IFI27L2Q9H2X8 130 aa4.66□□□□□ -1.66
CD44-237ENST00000534082 IFT22Q9H7X7 185 aa4.66□□□□□ -1.66
CD44-237ENST00000534082 GORASP2Q9H8Y8 452 aa4.66□□□□□ -1.66
CD44-237ENST00000534082 OR2S2Q9NQN1 319 aa4.66□□□□□ -1.66
CD44-237ENST00000534082 ABCD2Q9UBJ2 740 aa4.66□□□□□ -1.66
CD44-237ENST00000534082 JPT1Q9UK76 154 aa4.66□□□□□ -1.66
CD44-237ENST00000534082 TRAPPC2LQ9UL33 140 aa4.66□□□□□ -1.66
CD44-237ENST00000534082 DMRT1Q9Y5R6 373 aa4.66□□□□□ -1.66
CD44-237ENST00000534082 LRP1Q07954 4544 aaKnown RBP4.66□□□□□ -1.66
CD44-237ENST00000534082 FAT3Q8TDW7 4589 aa4.66□□□□□ -1.66
CD44-237ENST00000534082 CASQ2O14958 399 aaPredicted RBP4.65□□□□□ -1.67
CD44-237ENST00000534082 CA1P00915 261 aaPredicted RBP4.65□□□□□ -1.67
CD44-237ENST00000534082 PRH1P02810 166 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 OR9G9P0C7N8 305 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 CT45A6P0DMU7 189 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 CT45A5P0DMU8 189 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 CT45A7P0DMV0 189 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 T-ENOLP0DO92 83 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 MC5RP33032 325 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 RBM11P57052 281 aaKnown RBP4.65□□□□□ -1.67
CD44-237ENST00000534082 PJVKQ0ZLH3 352 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 TMEM187Q14656 261 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 RSU1Q15404 277 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 SMUG1Q53HV7 270 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 RPL39P5Q59GN2 51 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 FAM209BQ5JX69 171 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 SYT6Q5T7P8 510 aaPredicted RBP4.65□□□□□ -1.67
CD44-237ENST00000534082 ZNF691Q5VV52 312 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 LPCAT4Q643R3 524 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 OR4A47Q6IF82 309 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 GPHB5Q86YW7 130 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 APRG1Q8IVJ8 170 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 LYPD1Q8N2G4 141 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 STX19Q8N4C7 294 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 PXT1Q8NFP0 134 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 OR2AK2Q8NG84 335 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 OR10G2Q8NGC3 310 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 OR52L2PQ8NGH6 319 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 OR4K15Q8NH41 348 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 ASB9Q96DX5 294 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 TBX5Q99593 518 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 RNF5Q99942 180 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 SULT4A1Q9BR01 284 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 CHRDL1Q9BU40 450 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 FAM192AQ9GZU8 254 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 TAF9BQ9HBM6 251 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 ADGRL4Q9HBW9 690 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 CLN6Q9NWW5 311 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 ST3GAL6Q9Y274 331 aa4.65□□□□□ -1.67
CD44-237ENST00000534082 RPL36Q9Y3U8 105 aaKnown RBP4.65□□□□□ -1.67
CD44-237ENST00000534082 SAMHD1Q9Y3Z3 626 aaKnown RBP4.65□□□□□ -1.67
CD44-237ENST00000534082 LRP2P98164 4655 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 TRBV9A0A0B4J1U6 114 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 OR4C46A6NHA9 309 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 GABRPO00591 440 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 TSPAN4O14817 238 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 GEMIN2O14893 280 aaKnown RBP4.64□□□□□ -1.67
CD44-237ENST00000534082 SNX3O60493 162 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 EDF1O60869 148 aaKnown RBP4.64□□□□□ -1.67
CD44-237ENST00000534082 IGKV1-16P04430 117 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 CPEP16870 476 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 RCC1P18754 421 aaPredicted RBP4.64□□□□□ -1.67
CD44-237ENST00000534082 EPHA2P29317 976 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 NHLRC3Q5JS37 347 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 SLC25A30Q5SVS4 291 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 ATAD3CQ5T2N8 411 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 TMEM244Q5VVB8 128 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 DMKNQ6E0U4 476 aaPredicted RBP4.64□□□□□ -1.67
CD44-237ENST00000534082 TRAT1Q6PIZ9 186 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 ZNF767PQ75MW2 155 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 C6orf223Q8N319 242 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 OR5AN1Q8NGI8 311 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 OR13C3Q8NGS6 347 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 TNFAIP8L1Q8WVP5 186 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 MARC2Q969Z3 335 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 ZNF503Q96F45 646 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 NSMCE2Q96MF7 247 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 FEVQ99581 238 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 PHB2Q99623 299 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 TMPRSS5Q9H3S3 457 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 REEP1Q9H902 201 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 PIPOXQ9P0Z9 390 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 PRELID1Q9Y255 219 aa4.64□□□□□ -1.67
CD44-237ENST00000534082 EXOSC1Q9Y3B2 195 aaKnown RBP4.64□□□□□ -1.67
CD44-237ENST00000534082 METTL15A6NJ78 407 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 RAB29O14966 203 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 ARPC2O15144 300 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 MPPED1O15442 326 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 YPEL1O60688 119 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 OR2J3O76001 311 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 SCGB1D2O95969 90 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 MAS1P04201 325 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 C8orf88P0DMB2 117 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 COX4I1P13073 169 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 ARL3P36405 182 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 PSME3P61289 254 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 HTD2P86397 168 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 CDK5Q00535 292 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 MED21Q13503 144 aa4.63□□□□□ -1.67
CD44-237ENST00000534082 MPV17LQ2QL34 196 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms