RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PXMP4Q9Y6I8 212 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 SIP14410 1827 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 A0A1B0GUS0 222 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 OR2T8A6NH00 312 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 ANGPTL7O43827 346 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 TBX6O95947 436 aaPredicted RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 RHOCP08134 193 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 SPINK8P0C7L1 97 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 GPR183P32249 361 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 G6PCP35575 357 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 HINT1P49773 126 aaPredicted RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 DAP3P51398 398 aaKnown RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 ATP1B3P54709 279 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 FOXA1P55317 472 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 MTPNP58546 118 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 RPL15P61313 204 aaKnown RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 HSPE1P61604 102 aaKnown RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 IL15RAQ13261 267 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 MSMO1Q15800 293 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 ZNF77Q15935 545 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 MRPL23Q16540 153 aaKnown RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 TBC1D28Q2M2D7 210 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 TMEM211Q6ICI0 200 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 LEG1Q6P5S2 330 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 FAM159AQ6UWV7 190 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 UNQ6126/PRO20091Q6UXV3 157 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 RFLNAQ6ZTI6 216 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 NR2C2APQ86WQ0 139 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 ZDHHC23Q8IYP9 409 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 OR2L13Q8N349 312 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 SPEM1Q8N4L4 309 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 GCSAMQ8N6F7 178 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 TEX29Q8N6K0 151 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 ZNF611Q8N823 705 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 OR6T1Q8NGN1 323 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 OR4K13Q8NH42 304 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 C18orf32Q8TCD1 76 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 CLEC4CQ8WTT0 213 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 GNPNAT1Q96EK6 184 aaPredicted RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 HPDLQ96IR7 371 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 RASL10BQ96S79 203 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 ATP5SQ99766 215 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 RNF126Q9BV68 326 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 COMMD5Q9GZQ3 224 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 OR2D2Q9H210 308 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 SH3BGRL3Q9H299 93 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 RDH14Q9HBH5 336 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 CMC2Q9NRP2 79 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 LIN7CQ9NUP9 197 aaKnown RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 MDFICQ9P1T7 246 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 AK3Q9UIJ7 227 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 ZNF443Q9Y2A4 671 aaPredicted RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 YTHDF2Q9Y5A9 579 aaKnown RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 SOX21Q9Y651 276 aaPredicted RBP4.61□□□□□ -1.67
CD44-236ENST00000533222 LINC00312Q9Y6C7 94 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 ZNF780BQ9Y6R6 833 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 SCN1AP35498 2009 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 TTC3P53804 2025 aa4.61□□□□□ -1.67
CD44-236ENST00000533222 BRCA1P38398 1863 aaKnown RBP4.6□□□□□ -1.67
CD44-236ENST00000533222 TRAV8-6A0A0B4J262 113 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 CGB1A6NKQ9 187 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 C2CD4BA6NLJ0 364 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 OR4C45A6NMZ5 311 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 K7N7A8 449 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 SAP18O00422 153 aaKnown RBP4.6□□□□□ -1.67
CD44-236ENST00000533222 TNFSF11O14788 317 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 CRXO43186 299 aaPredicted RBP4.6□□□□□ -1.67
CD44-236ENST00000533222 TBL1XO60907 577 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 CRLF1O75462 422 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 PPP1R3DO95685 299 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 EML2O95834 649 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 NCR2O95944 276 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 MT-ND6P03923 174 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 GPX1P07203 203 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 LOXP28300 417 aaPredicted RBP4.6□□□□□ -1.67
CD44-236ENST00000533222 ASIPP42127 132 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 UFM1P61960 85 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 IL13RA2Q14627 380 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 SYT14P1Q58G82 188 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 SPATA31B1PQ5VZV4 182 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 ZNF343Q6P1L6 599 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 AMTNQ6UX39 209 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 CYP2G1PQ6ZSU1 146 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 APCDD1LQ8NCL9 501 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 OR13A1Q8NGR1 328 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 OR5H2Q8NGV7 314 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 OR6K6Q8NGW6 343 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 OR2T10Q8NGZ9 312 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 OR1L1Q8NH94 360 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 FLYWCH2Q96CP2 140 aaKnown RBP4.6□□□□□ -1.67
CD44-236ENST00000533222 SLC25A38Q96DW6 304 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 SCGB3A2Q96PL1 93 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 MCHR1Q99705 422 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 HES4Q9HCC6 221 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 CISD1Q9NZ45 108 aaKnown RBP4.6□□□□□ -1.67
CD44-236ENST00000533222 THYN1Q9P016 225 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 CSAG2Q9Y5P2 127 aa4.6□□□□□ -1.67
CD44-236ENST00000533222 SNED1Q8TER0 1413 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms