RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 ABCA11PQ4W5N1 156 aa13.08□□□□□ -0.32
LSM1-204ENST00000522515 ZNF66Q6ZN08 573 aa13.08□□□□□ -0.32
LSM1-204ENST00000522515 SIGLECL1Q8N7X8 197 aa13.08□□□□□ -0.32
LSM1-204ENST00000522515 ADAD2Q8NCV1 583 aaKnown RBP13.08□□□□□ -0.32
LSM1-204ENST00000522515 HSD17B10Q99714 261 aaKnown RBP13.08□□□□□ -0.32
LSM1-204ENST00000522515 SSX3Q99909 188 aa13.08□□□□□ -0.32
LSM1-204ENST00000522515 OCEL1Q9H607 264 aa13.08□□□□□ -0.32
LSM1-204ENST00000522515 FLVCR2Q9UPI3 526 aa13.08□□□□□ -0.32
LSM1-204ENST00000522515 C14orf166Q9Y224 244 aaKnown RBP13.08□□□□□ -0.32
LSM1-204ENST00000522515 ARHGDIBP52566 201 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 SCGB2A2Q13296 93 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 Q6YL49 198 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 KCTD9Q7L273 389 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 TBC1D26Q86UD7 250 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 OR5AN1Q8NGI8 311 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 OR51H1Q8NH63 302 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 ENKURQ8TC29 256 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 PIFOQ8TCI5 191 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 TCTEX1D2Q8WW35 142 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 DDB2Q92466 427 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 ZDHHC16Q969W1 377 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 TEP1Q99973 2627 aaKnown RBP13.07□□□□□ -0.32
LSM1-204ENST00000522515 FAM90A9PA6NNJ1 464 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 H0YJW9 148 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 IGHV4-59P01825 116 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 FAM157CP0CG43 387 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 BRS3P32247 399 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 DYNLT3P51808 116 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 BRWD1-AS2P59051 145 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 RND3P61587 244 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 LRRC75BQ2VPJ9 315 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 FBLN7Q53RD9 439 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 OR2B11Q5JQS5 317 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 TMED4Q7Z7H5 227 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 TMEM230Q96A57 120 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 ADTRPQ96IZ2 230 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 COPZ2Q9P299 210 aa13.07□□□□□ -0.32
LSM1-204ENST00000522515 ARPC1BO15143 372 aaKnown RBP13.06□□□□□ -0.32
LSM1-204ENST00000522515 MPPED1O15442 326 aa13.06□□□□□ -0.32
LSM1-204ENST00000522515 SNRNP70P08621 437 aaKnown RBP13.06□□□□□ -0.32
LSM1-204ENST00000522515 CD1BP29016 333 aa13.06□□□□□ -0.32
LSM1-204ENST00000522515 S100GP29377 79 aa13.06□□□□□ -0.32
LSM1-204ENST00000522515 IER3P46695 156 aa13.06□□□□□ -0.32
LSM1-204ENST00000522515 CATR1Q13166 79 aa13.06□□□□□ -0.32
LSM1-204ENST00000522515 AANATQ16613 207 aa13.06□□□□□ -0.32
LSM1-204ENST00000522515 DUSP18Q8NEJ0 188 aa13.06□□□□□ -0.32
LSM1-204ENST00000522515 CAPSLQ8WWF8 208 aa13.06□□□□□ -0.32
LSM1-204ENST00000522515 C20orf85Q9H1P6 137 aa13.06□□□□□ -0.32
LSM1-204ENST00000522515 SLC35D1Q9NTN3 355 aa13.06□□□□□ -0.32
LSM1-204ENST00000522515 NUDT15Q9NV35 164 aa13.06□□□□□ -0.32
LSM1-204ENST00000522515 TRAV6A0A075B6T7 132 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 H3BUX3 64 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 H7C2Y5 167 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 HOXA3O43365 443 aaPredicted RBP13.05□□□□□ -0.32
LSM1-204ENST00000522515 FCGR3BO75015 233 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 VENTXO95231 258 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 IGKV1D-33P01593 117 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 IGKV1-33P01594 117 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 AKR1C4P17516 323 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 F2RP25116 425 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 MC5RP33032 325 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 CENPSQ8N2Z9 138 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 CCDC71LQ8N9Z2 235 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 PRELID3BQ9Y3B1 194 aa13.05□□□□□ -0.32
LSM1-204ENST00000522515 CUBNO60494 3623 aa13.04□□□□□ -0.32
LSM1-204ENST00000522515 CRYM-AS1A6NIL9 109 aa13.04□□□□□ -0.32
LSM1-204ENST00000522515 RNF212BA8MTL3 300 aa13.04□□□□□ -0.32
LSM1-204ENST00000522515 APOA2P02652 100 aa13.04□□□□□ -0.32
LSM1-204ENST00000522515 IGKV1-16P04430 117 aa13.04□□□□□ -0.32
LSM1-204ENST00000522515 SPNP16150 400 aa13.04□□□□□ -0.32
LSM1-204ENST00000522515 WASHC3Q9Y3C0 194 aa13.04□□□□□ -0.32
LSM1-204ENST00000522515 NUBP2Q9Y5Y2 271 aa13.04□□□□□ -0.32
LSM1-204ENST00000522515 RAMP3O60896 148 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 PTTG1O95997 202 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 ANXA7P20073 488 aaKnown RBP13.03□□□□□ -0.32
LSM1-204ENST00000522515 TAGLNQ01995 201 aaKnown RBP13.03□□□□□ -0.32
LSM1-204ENST00000522515 EBI3Q14213 229 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 HES1Q14469 280 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 HNF4GQ14541 408 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 LY6EQ16553 131 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 RBMS3Q6XE24 437 aaKnown RBP13.03□□□□□ -0.32
LSM1-204ENST00000522515 SLC25A42Q86VD7 318 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 THNSL2Q86YJ6 484 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 SPAG16Q8N0X2 631 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 SSMEM1Q8WWF3 244 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 EAF1Q96JC9 268 aaPredicted RBP13.03□□□□□ -0.32
LSM1-204ENST00000522515 RITA1Q96K30 269 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 TP53RKQ96S44 253 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 NAA60Q9H7X0 242 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 TNFRSF19Q9NS68 423 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 LIN7CQ9NUP9 197 aaKnown RBP13.03□□□□□ -0.32
LSM1-204ENST00000522515 TEX13DA0A0J9YY54 714 aaPredicted RBP13.03□□□□□ -0.32
LSM1-204ENST00000522515 C3orf85A0A1B0GTC6 90 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 CRYZL1O95825 349 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 H2AFB2P0C5Z0 115 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 FAM106CPP0CH98 169 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 RAB25P57735 213 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 SUPT4H1P63272 117 aaKnown RBP13.03□□□□□ -0.32
LSM1-204ENST00000522515 RTL8BQ17RB0 113 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 RGS21Q2M5E4 152 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms