RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 CHD3Q12873 2000 aaKnown RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 TRAV18A0A075B6X5 111 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 A0A0U1RQK1 487 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 A0A1W2PRD5 423 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 A0A1W2PRF3 423 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 A0A1W2PRM7 423 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 MEX3AA1L020 520 aaKnown RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 FUOMA2VDF0 154 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 C17orf98A8MV24 154 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 CLDN34H7C241 214 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 SLC33A1O00400 549 aaPredicted RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 NPFFO15130 113 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 MRPS14O60783 128 aaKnown RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 ZNF780AO75290 641 aaPredicted RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 RBP4P02753 201 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 ZNF728P0DKX0 622 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 GTF2F2P13984 249 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 SRMP19623 302 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 PSMA1P25786 263 aaKnown RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 ERP29P30040 261 aaKnown RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 VEGFCP49767 419 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 GABARAPL2P60520 117 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 RPS25P62851 125 aaKnown RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 UBA52P62987 128 aaKnown RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 ACTG1P63261 375 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 EMX1Q04741 257 aaPredicted RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 AESQ08117 197 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 MLLT11Q13015 90 aaPredicted RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 KLRD1Q13241 179 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 GPR176Q14439 515 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 SLC9A3R2Q15599 337 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 TRAM1Q15629 374 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 PIGYQ3MUY2 71 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 SLC22A6Q4U2R8 563 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 HSD17B12Q53GQ0 312 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 FAM27D1Q5T7N8 215 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 GLIPR1L1Q6UWM5 242 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 TRAPPC6BQ86SZ2 158 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 OSR2Q8N2R0 312 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 PNKDQ8N490 385 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 C11orf42Q8N5U0 333 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 TPRX1Q8N7U7 411 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 OR51T1Q8NGJ9 327 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 PHYHIPQ92561 330 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 BSCL2Q96G97 398 aaPredicted RBP5.45□□□□□ -1.54
SDCBP-208ENST00000520228 ZNF714Q96N38 554 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 UQCC2Q9BRT2 126 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 SLITRK2Q9H156 845 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 PPA2Q9H2U2 334 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 ACOT13Q9NPJ3 140 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 ST3GAL6Q9Y274 331 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 LINC00312Q9Y6C7 94 aa5.45□□□□□ -1.54
SDCBP-208ENST00000520228 YLPM1P49750 1951 aaKnown RBP5.44□□□□□ -1.54
SDCBP-208ENST00000520228 TRGV10A0A0A0MS01 117 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 A0A0B4J203 849 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 ODAMA1E959 279 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 MPTX1A8MV57 137 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 GEMIN2O14893 280 aaKnown RBP5.44□□□□□ -1.54
SDCBP-208ENST00000520228 SAP30O75446 220 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 SC5DO75845 299 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 ARL6IP5O75915 188 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 OR7C1O76099 320 aaPredicted RBP5.44□□□□□ -1.54
SDCBP-208ENST00000520228 DUS4LO95620 317 aaKnown RBP5.44□□□□□ -1.54
SDCBP-208ENST00000520228 PAHP00439 452 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 CSN2P05814 226 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 MELTFP08582 738 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 FBP1P09467 338 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 UCHL1P09936 223 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 SERPINA2P20848 420 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 COX7A1P24310 79 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 SAA4P35542 130 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 DLX6P56179 175 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 RBM11P57052 281 aaKnown RBP5.44□□□□□ -1.54
SDCBP-208ENST00000520228 CYCSP99999 105 aaKnown RBP5.44□□□□□ -1.54
SDCBP-208ENST00000520228 ATXN7L3Q14CW9 347 aaPredicted RBP5.44□□□□□ -1.54
SDCBP-208ENST00000520228 PAN3Q58A45 887 aaKnown RBP5.44□□□□□ -1.54
SDCBP-208ENST00000520228 NHLRC3Q5JS37 347 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 GLT8D1Q68CQ7 371 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 HCP5Q6MZN7 132 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 TMEM91Q6ZNR0 172 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 LINC00596Q86U02 117 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 LRRTM1Q86UE6 522 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 LYPD6Q86Y78 171 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 NHLRC2Q8NBF2 726 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 OR4D6Q8NGJ1 314 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 OR13D1Q8NGV5 346 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 MRPS24Q96EL2 167 aaKnown RBP5.44□□□□□ -1.54
SDCBP-208ENST00000520228 C1orf147Q96MC9 270 aaPredicted RBP5.44□□□□□ -1.54
SDCBP-208ENST00000520228 TNFRSF19Q9NS68 423 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 GHRLQ9UBU3 117 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 LRRC42Q9Y546 428 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 DNHD1Q96M86 4753 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 WNK2Q9Y3S1 2297 aa5.44□□□□□ -1.54
SDCBP-208ENST00000520228 CUBNO60494 3623 aa5.43□□□□□ -1.54
SDCBP-208ENST00000520228 IGLV7-46A0A075B6I9 117 aa5.43□□□□□ -1.54
SDCBP-208ENST00000520228 MEIKINA0A087WXM9 373 aa5.43□□□□□ -1.54
SDCBP-208ENST00000520228 CRTAPO75718 401 aaPredicted RBP5.43□□□□□ -1.54
SDCBP-208ENST00000520228 RLN1P04808 185 aa5.43□□□□□ -1.54
SDCBP-208ENST00000520228 UBBP0CG47 229 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms