RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 ZNF256Q9Y2P7 627 aaPredicted RBP13.56□□□□□ -0.24
DDX41-217ENST00000515562 METTL21EPA6NDL7 271 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 BET1O15155 118 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 MRPS14O60783 128 aaKnown RBP13.55□□□□□ -0.24
DDX41-217ENST00000515562 CA2P00918 260 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 EGR2P11161 476 aaPredicted RBP13.55□□□□□ -0.24
DDX41-217ENST00000515562 HIST1H1DP16402 221 aaKnown RBP13.55□□□□□ -0.24
DDX41-217ENST00000515562 RPS16P62249 146 aaKnown RBP13.55□□□□□ -0.24
DDX41-217ENST00000515562 MOGAT2Q3SYC2 334 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 UNQ5815/PRO19632Q6UWF5 114 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 ZNF429Q86V71 674 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 ARPC1AQ92747 370 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 CLCC1Q96S66 551 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 OR2D2Q9H210 308 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 SLA2Q9H6Q3 261 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 SLC35D1Q9NTN3 355 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 GAB2Q9UQC2 676 aa13.55□□□□□ -0.24
DDX41-217ENST00000515562 LSM4Q9Y4Z0 139 aaKnown RBP13.55□□□□□ -0.24
DDX41-217ENST00000515562 DNAH9Q9NYC9 4486 aa13.54□□□□□ -0.24
DDX41-217ENST00000515562 TRBV6-7A0A0A0MS04 114 aa13.54□□□□□ -0.24
DDX41-217ENST00000515562 SHISA3A0PJX4 238 aa13.54□□□□□ -0.24
DDX41-217ENST00000515562 LINC01619G3V211 115 aa13.54□□□□□ -0.24
DDX41-217ENST00000515562 RAB27BO00194 218 aa13.54□□□□□ -0.24
DDX41-217ENST00000515562 OVOL1O14753 267 aa13.54□□□□□ -0.24
DDX41-217ENST00000515562 NHLRC4P0CG21 123 aaPredicted RBP13.54□□□□□ -0.24
DDX41-217ENST00000515562 GNB3P16520 340 aa13.54□□□□□ -0.24
DDX41-217ENST00000515562 CBX3Q13185 183 aa13.54□□□□□ -0.24
DDX41-217ENST00000515562 ARL6IP1Q15041 203 aa13.54□□□□□ -0.24
DDX41-217ENST00000515562 IGSF11Q5DX21 431 aa13.54□□□□□ -0.24
DDX41-217ENST00000515562 FAM103A1Q9BTL3 118 aaKnown RBP13.54□□□□□ -0.24
DDX41-217ENST00000515562 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.54□□□□□ -0.24
DDX41-217ENST00000515562 A0A075B6Q4 140 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 SLC25A17O43808 307 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 OR8U9P0C7N5 309 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 GSTT2P0CG29 244 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 GSTT2BP0CG30 244 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 TALDO1P37837 337 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 LGALS7P47929 136 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 TPPP2P59282 170 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 TAGLNQ01995 201 aaKnown RBP13.53□□□□□ -0.24
DDX41-217ENST00000515562 SRSF7Q16629 238 aaKnown RBP eCLIP13.53□□□□□ -0.24
DDX41-217ENST00000515562 C22orf42Q6IC83 251 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 LFNGQ8NES3 379 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 CASTOR1Q8WTX7 329 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 DCUN1D4Q92564 292 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 GINS4Q9BRT9 223 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 ALX4Q9H161 411 aaPredicted RBP13.53□□□□□ -0.24
DDX41-217ENST00000515562 SDHAF2Q9NX18 166 aa13.53□□□□□ -0.24
DDX41-217ENST00000515562 LINC00205P59089 165 aa13.52□□□□□ -0.25
DDX41-217ENST00000515562 ARFRP1Q13795 201 aa13.52□□□□□ -0.25
DDX41-217ENST00000515562 FXYD3Q14802 87 aa13.52□□□□□ -0.25
DDX41-217ENST00000515562 RTL8BQ17RB0 113 aa13.52□□□□□ -0.25
DDX41-217ENST00000515562 UBE2UQ5VVX9 321 aa13.52□□□□□ -0.25
DDX41-217ENST00000515562 Q6ZS49 121 aa13.52□□□□□ -0.25
DDX41-217ENST00000515562 GRPEL2Q8TAA5 225 aa13.52□□□□□ -0.25
DDX41-217ENST00000515562 FCGR1BQ92637 280 aa13.52□□□□□ -0.25
DDX41-217ENST00000515562 HARBI1Q96MB7 349 aa13.52□□□□□ -0.25
DDX41-217ENST00000515562 WWC2-AS2Q96NR7 200 aa13.52□□□□□ -0.25
DDX41-217ENST00000515562 TPSG1Q9NRR2 321 aa13.52□□□□□ -0.25
DDX41-217ENST00000515562 RBM7Q9Y580 266 aaKnown RBP13.52□□□□□ -0.25
DDX41-217ENST00000515562 IGHV4OR15-8A0A075B7B6 117 aa13.51□□□□□ -0.25
DDX41-217ENST00000515562 A0A087WW49 117 aa13.51□□□□□ -0.25
DDX41-217ENST00000515562 H3BUA1 57 aa13.51□□□□□ -0.25
DDX41-217ENST00000515562 ARPC1BO15143 372 aaKnown RBP13.51□□□□□ -0.25
DDX41-217ENST00000515562 SAP30O75446 220 aa13.51□□□□□ -0.25
DDX41-217ENST00000515562 LY86O95711 162 aa13.51□□□□□ -0.25
DDX41-217ENST00000515562 SLURP1P55000 103 aa13.51□□□□□ -0.25
DDX41-217ENST00000515562 MAFIPQ8WZ33 124 aa13.51□□□□□ -0.25
DDX41-217ENST00000515562 DLX4Q92988 240 aaPredicted RBP13.51□□□□□ -0.25
DDX41-217ENST00000515562 ATG5Q9H1Y0 275 aa13.51□□□□□ -0.25
DDX41-217ENST00000515562 Q9H521 79 aa13.51□□□□□ -0.25
DDX41-217ENST00000515562 ZNF230Q9UIE0 474 aaPredicted RBP13.51□□□□□ -0.25
DDX41-217ENST00000515562 A0A0B4J203 849 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 CNIH1O95406 144 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 IGLV2-23P01705 113 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 TRGV3P03979 118 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 HSPB1P04792 205 aaKnown RBP13.5□□□□□ -0.25
DDX41-217ENST00000515562 RRASP10301 218 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 DTYMKP23919 212 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 PSMB9P28065 219 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 FGF9P31371 208 aaPredicted RBP13.5□□□□□ -0.25
DDX41-217ENST00000515562 NR2C2APQ86WQ0 139 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 POC5Q8NA72 575 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 ADTRPQ96IZ2 230 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 TMEM68Q96MH6 324 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 MS4A10Q96PG2 267 aa13.5□□□□□ -0.25
DDX41-217ENST00000515562 NOTOA8MTQ0 251 aa13.49□□□□□ -0.25
DDX41-217ENST00000515562 SHOXO15266 292 aa13.49□□□□□ -0.25
DDX41-217ENST00000515562 SCGNO76038 276 aa13.49□□□□□ -0.25
DDX41-217ENST00000515562 IGHV3-11P01762 117 aa13.49□□□□□ -0.25
DDX41-217ENST00000515562 SNRPBP14678 240 aaKnown RBP13.49□□□□□ -0.25
DDX41-217ENST00000515562 PITPNAQ00169 270 aa13.49□□□□□ -0.25
DDX41-217ENST00000515562 TMEM177Q53S58 311 aa13.49□□□□□ -0.25
DDX41-217ENST00000515562 ACSM6Q6P461 480 aa13.49□□□□□ -0.25
DDX41-217ENST00000515562 H1FOOQ8IZA3 346 aaPredicted RBP13.49□□□□□ -0.25
DDX41-217ENST00000515562 RHOVQ96L33 236 aa13.49□□□□□ -0.25
DDX41-217ENST00000515562 ZNF355PQ9NSJ1 428 aa13.49□□□□□ -0.25
DDX41-217ENST00000515562 TXNL4BQ9NX01 149 aaKnown RBP13.49□□□□□ -0.25
DDX41-217ENST00000515562 STUB1Q9UNE7 303 aa13.49□□□□□ -0.25
DDX41-217ENST00000515562 SMAD5-AS1Q9Y6J3 95 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms