RNA–Protein interactions for RNA: ENST00000514654.5

ATP2C1-222, Transcript of ATPase secretory pathway Ca2+ transporting 1, human

TSL 1 (best)

Gene ATP2C1, Length 4,730 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATP2C1-222	ENST00000514654	SPRR3	Q9UBC9	169 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	C5orf63	A6NC05	138 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	MPTX1	A8MV57	137 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	ZG16	O60844	167 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	MUC1	P15941	1255 aa	Predicted RBP	5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	IGFBP3	P17936	291 aa	Predicted RBP	5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	PAX6	P26367	422 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	GLRX	P35754	106 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	DLK1	P80370	383 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	PRB3	Q04118	309 aa	Predicted RBP	5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	RPL39P5	Q59GN2	51 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	TIMM23B	Q5SRD1	257 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	PDPN	Q86YL7	162 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	SAXO1	Q8IYX7	474 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	OR8I2	Q8N0Y5	310 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	MUC15	Q8N387	334 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	FAM216B	Q8N7L0	139 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	OR4C12	Q96R67	309 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	GFI1	Q99684	422 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	NAGK	Q9UJ70	344 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	CACNA1A	O00555	2505 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	IGLV3-32	A0A0A0MS00	114 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	IGHV2OR16-5	A0A0B4J2B6	119 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	XKRY2	A2RUG3	117 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	MARCH11	A6NNE9	402 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	C12orf77	C9JDV5	145 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654		H3BQ15	152 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	FCN1	O00602	326 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	GATC	O43716	136 aa	Known RBP	5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	HSBP1	O75506	76 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	MDK	P21741	143 aa	Predicted RBP	5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	OR10J1	P30954	320 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	TMEM187	Q14656	261 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	GUCA2B	Q16661	112 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	ABLIM2	Q6H8Q1	611 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	ABHD12	Q8N2K0	398 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	OR10D4P	Q8NGN7	298 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	MRPL30	Q8TCC3	161 aa	Known RBP	5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	EAF1	Q96JC9	268 aa	Predicted RBP	5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	CHRDL1	Q9BU40	450 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	PARP11	Q9NR21	331 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	C1RL	Q9NZP8	487 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	VAX2	Q9UIW0	290 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	RAX	Q9Y2V3	346 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	HEATR1	Q9H583	2144 aa	Known RBP	5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	DUXB	A0A1W2PPF3	345 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	MELTF	P08582	738 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	SFTPC	P11686	197 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	CD40	P25942	277 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	RAN	P62826	216 aa	Known RBP	5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	FOXF2	Q12947	444 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	MEGF10	Q96KG7	1140 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	DIRC2	Q96SL1	478 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	SH3BGRL3	Q9H299	93 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	TMEM140	Q9NV12	185 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	GAR1	Q9NY12	217 aa	Known RBP	5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	IL19	Q9UHD0	177 aa		5.25	□□□□□ -1.57
ATP2C1-222	ENST00000514654	PCNX2	A6NKB5	2137 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	IGHV3OR16-10	A0A075B7F0	116 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	MSGN1	A6NI15	193 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	PITX3	O75364	302 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	REG1A	P05451	166 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	CRYBA1	P05813	215 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	PTGDS	P41222	190 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	RPL27A	P46776	148 aa	Known RBP	5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	SUMO1	P63165	101 aa	Known RBP	5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	HIST1H3A	P68431	136 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	BSPH1	Q075Z2	132 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	GCSAM	Q8N6F7	178 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	CYB561D1	Q8N8Q1	229 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	ZCCHC14	Q8WYQ9	949 aa	Known RBP	5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	TMEM18	Q96B42	140 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	RSPO3	Q9BXY4	272 aa	Predicted RBP	5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	ZNF586	Q9NXT0	402 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	IDI2-AS1	Q9NZ38	188 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	PTPRD	P23468	1912 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	PPIAL4C	A0A0B4J2A2	164 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	CTXND1	A0A1B0GTU2	59 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	PPIAL4G	P0DN37	164 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	C10orf113	Q5VZT2	155 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	MIC13	Q5XKP0	118 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	ZNF596	Q8TC21	504 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	SRD5A3	Q9H8P0	318 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	IGHV1-69-2	A0A0G2JMI3	117 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	OR2J3	O76001	311 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	GAPDH	P04406	335 aa	Known RBP	5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	MMP9	P14780	707 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	SULT1A2	P50226	295 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	ERVFRD-1	P60508	538 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	RPL8	P62917	257 aa	Known RBP	5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	KLRB1	Q12918	225 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	ACP7	Q6ZNF0	438 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	ZNF788	Q6ZQV5	615 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	GGN	Q86UU5	652 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	DOLPP1	Q86YN1	238 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	PAQR4	Q8N4S7	273 aa	Predicted RBP	5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	OR10G8	Q8NGN5	311 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	OR13A1	Q8NGR1	328 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	VOPP1	Q96AW1	172 aa		5.24	□□□□□ -1.57
ATP2C1-222	ENST00000514654	SEC11C	Q9BY50	192 aa		5.24	□□□□□ -1.57

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms