RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 SLC25A48Q6ZT89 311 aaKnown RBP6.9□□□□□ -1.3
RNF4-220ENST00000513578 PDZD9Q8IXQ8 264 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 SPAG16Q8N0X2 631 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 EIF4E3Q8N5X7 224 aaKnown RBP6.9□□□□□ -1.3
RNF4-220ENST00000513578 LINC00311Q8N616 119 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 OR2C3Q8N628 320 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 CT45A3Q8NHU0 189 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 DDB2Q92466 427 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 RAB39BQ96DA2 213 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 SMIM8Q96KF7 97 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 ABHD14AQ9BUJ0 271 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 TMUB1Q9BVT8 246 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 CACFD1Q9UGQ2 172 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 WSB1Q9Y6I7 421 aa6.9□□□□□ -1.3
RNF4-220ENST00000513578 ROS1P08922 2347 aa6.9□□□□□ -1.31
RNF4-220ENST00000513578 PKDREJQ9NTG1 2253 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 CREBBPQ92793 2442 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 LINC00473A8K010 186 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 C17orf98A8MV24 154 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 J3QKU1 62 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 KCNAB3O43448 404 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 MED6O75586 246 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 C1QL1O75973 258 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 ZNF16P17020 682 aaPredicted RBP6.89□□□□□ -1.31
RNF4-220ENST00000513578 NDUFB7P17568 137 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 THBS3P49746 956 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 AKR1C2P52895 323 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 PAX9P55771 341 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 DLX6P56179 175 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 POLR2GP62487 172 aaKnown RBP eCLIP6.89□□□□□ -1.31
RNF4-220ENST00000513578 RPL23AP62750 156 aaKnown RBP6.89□□□□□ -1.31
RNF4-220ENST00000513578 RPL31P62899 125 aaKnown RBP6.89□□□□□ -1.31
RNF4-220ENST00000513578 VAMP2P63027 116 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 EWSR1Q01844 656 aaKnown RBP eCLIP6.89□□□□□ -1.31
RNF4-220ENST00000513578 TAGLNQ01995 201 aaKnown RBP6.89□□□□□ -1.31
RNF4-220ENST00000513578 TMEM155Q4W5P6 130 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 TMEM200BQ69YZ2 307 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 FAM71F2Q6NXP2 309 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 LYPD2Q6UXB3 125 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 FOXRED2Q8IWF2 684 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 ODF3L1Q8IXM7 274 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 TMEM252Q8N6L7 170 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 C8orf46Q8TAG6 207 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 TCTEX1D2Q8WW35 142 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 ZNF714Q96N38 554 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 ZNF251Q9BRH9 671 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 ZC4H2Q9NQZ6 224 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 C19orf12Q9NSK7 152 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 CTSZQ9UBR2 303 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 FBXL17Q9UF56 701 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 PRELID3BQ9Y3B1 194 aa6.89□□□□□ -1.31
RNF4-220ENST00000513578 ARID1AO14497 2285 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 BORCS7-ASMTA0A0B4J1R7 106 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 ANKRD34BA5PLL1 514 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 NUDT19A8MXV4 375 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 M0R1X1 148 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 WRBO00258 174 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 DVL1O14640 695 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 TXNL1O43396 289 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 SYNGR2O43760 224 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 CHST1O43916 411 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 RAMP3O60896 148 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 SCAF4O95104 1147 aaKnown RBP6.88□□□□□ -1.31
RNF4-220ENST00000513578 RBP4P02753 201 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 SEC11BP0C7V7 166 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 FAM157CP0CG43 387 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 COL8A2P25067 703 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 UQCRFS1P47985 274 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 ZNF273Q14593 569 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 POU2AF1Q16633 256 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 PDLIM3Q53GG5 364 aaPredicted RBP6.88□□□□□ -1.31
RNF4-220ENST00000513578 NCR3LG1Q68D85 454 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 RPL7L1Q6DKI1 246 aaKnown RBP6.88□□□□□ -1.31
RNF4-220ENST00000513578 ZNF841Q6ZN19 808 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 HSD17B13Q7Z5P4 300 aaPredicted RBP6.88□□□□□ -1.31
RNF4-220ENST00000513578 STPG2Q8N412 459 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 RNASE11Q8TAA1 199 aaKnown RBP6.88□□□□□ -1.31
RNF4-220ENST00000513578 RNF141Q8WVD5 230 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 SAT2Q96F10 170 aaPredicted RBP6.88□□□□□ -1.31
RNF4-220ENST00000513578 GINS3Q9BRX5 216 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 BARX1Q9HBU1 254 aaPredicted RBP6.88□□□□□ -1.31
RNF4-220ENST00000513578 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.88□□□□□ -1.31
RNF4-220ENST00000513578 HSPB7Q9UBY9 170 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 CACNG5Q9UF02 275 aa6.88□□□□□ -1.31
RNF4-220ENST00000513578 NOTCH2Q04721 2471 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 SAA2-SAA4A0A096LPE2 208 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 A0A1W2PPH5 198 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 IGSF23A1L1A6 192 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 FAM24AA6NFZ4 105 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 SLC31A2O15432 143 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 SSSCA1O60232 199 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 S1PR2O95136 353 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 TMEM50AO95807 157 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 SAA2P0DJI9 122 aaPredicted RBP6.87□□□□□ -1.31
RNF4-220ENST00000513578 OMGP23515 440 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 ZNF137PP52743 207 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 ZNF266Q14584 549 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 LTC4SQ16873 150 aa6.87□□□□□ -1.31
RNF4-220ENST00000513578 DHRS7BQ6IAN0 325 aaPredicted RBP6.87□□□□□ -1.31
RNF4-220ENST00000513578 BTNL3Q6UXE8 466 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms