RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TMPRSS7Q7RTY8 843 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 TMEM183AQ8IXX5 376 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 MBNL3Q9NUK0 354 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 HSPB7Q9UBY9 170 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 IL17BQ9UHF5 180 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 TGOLN2O43493 480 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 GYPAP02724 150 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 SLC10A1Q14973 349 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 DCAF10Q5QP82 559 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 SDSLQ96GA7 329 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 DCTN5Q9BTE1 182 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 TMEM147Q9BVK8 224 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 ACTR3CQ9C0K3 210 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 FZR1Q9UM11 496 aa7.77□□□□□ -1.17
LIMCH1-215ENST00000512632 PGPEP1LA6NFU8 196 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 HBZP02008 142 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 GZMBP10144 247 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 NPPCP23582 126 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 BRWD1-AS2P59051 145 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 ERVK11-1P61568 191 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 TBC1D28Q2M2D7 210 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 CST9LP1Q5W188 147 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 FAM234AQ9H0X4 552 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 ABI3Q9P2A4 366 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 DSPP15924 2871 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 COX5AP20674 150 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 PSG7Q13046 419 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 NINJ1Q92982 152 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 GP6Q9HCN6 339 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 TNRC6AQ8NDV7 1962 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 RNF212BA8MTL3 300 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 SSTR5P35346 364 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 EDDM3BP56851 147 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 USF2Q15853 346 aaPredicted RBP7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 FIP1L1Q6UN15 594 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 H2BFWTQ7Z2G1 175 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 REC114Q7Z4M0 266 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 OR2T10Q8NGZ9 312 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 TMEM204Q9BSN7 226 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 TRAV38-1A0A0B4J264 116 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 ST8SIA5O15466 376 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 IFNA10P01566 189 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 JOSD1Q15040 202 aaPredicted RBP7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 STRADBQ9C0K7 418 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 METRNQ9UJH8 293 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 WIPI2Q9Y4P8 454 aa7.76□□□□□ -1.17
LIMCH1-215ENST00000512632 TMEM30CPA0ZSE6 113 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 FAM90A26D6RGX4 464 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 TMEM250H0YL14 139 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 COL8A2P25067 703 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 MPV17P39210 176 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 NUBP1P53384 320 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 UBE2NP61088 152 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 Q3ZCU0 254 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 ACSF3Q4G176 576 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 ATP1A1-AS1Q5TC04 95 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 PRAMEF6Q5VXH4 476 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 ZNF664Q8N3J9 261 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 ZNF645Q8N7E2 425 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 NANOS1Q8WY41 292 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 PYGO2Q9BRQ0 406 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 NPCDR1Q9BY65 106 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 PATZ1Q9HBE1 687 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 PSG11Q9UQ72 335 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 C11orf94C9JXX5 98 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 SMPD2O60906 423 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 SP1P08047 785 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 GNB2P62879 340 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 PMS2P11Q13670 270 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 ZNF146Q15072 292 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 FAM78BQ5VT40 261 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 DMRTC2Q8IXT2 367 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 NEIL1Q96FI4 390 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 A0A0U1RQK1 487 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 A0A1W2PNU3 283 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 PMS2P5A8MQ11 134 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 NDUFB7P17568 137 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 HNF1AP20823 631 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 MPLP40238 635 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 ARG2P78540 354 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 CATR1Q13166 79 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 EDDM3AQ14507 147 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 RNFT1Q5M7Z0 435 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 ALKBH2Q6NS38 261 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 Q6ZR03 302 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 Q8IYB0 196 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 DERL1Q9BUN8 251 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 A0A1B0GUS0 222 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 LINC00473A8K010 186 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 AGFG2O95081 481 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 HRASP01112 189 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 SNRPCP09234 159 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 ATP5G3P48201 142 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 MISP3Q96FF7 219 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 MSL2Q9HCI7 577 aa7.75□□□□□ -1.17
LIMCH1-215ENST00000512632 NDUFB4O95168 129 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 WNT2P09544 360 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 CDC34P49427 236 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 FABP6P51161 128 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 MRPL41Q8IXM3 137 aaKnown RBP7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms