RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 DYRK1AQ13627 763 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 RTL8BQ17RB0 113 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 ACTBL2Q562R1 376 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 PYDC2Q56P42 97 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 RNASE10Q5GAN6 216 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 OR2B11Q5JQS5 317 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 FOXB2Q5VYV0 432 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 Q6ZS46 218 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 LYSMD2Q8IV50 215 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 C5orf56Q8N8D9 126 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 OR6F1Q8NGZ6 308 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 C5orf30Q96GV9 206 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 ADTRPQ96IZ2 230 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 CCL28Q9NRJ3 127 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 TAS2R8Q9NYW2 309 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 MTFP1Q9UDX5 166 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 GAB2Q9UQC2 676 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 RBMX2Q9Y388 322 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 NBR2O15453 112 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 TNFSF12O43508 249 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 PROP1O75360 226 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 CNTFRP26992 372 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 C11orf88Q6PI97 169 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 KCTD9Q7L273 389 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 OVCH2Q7RTZ1 564 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 PDPNQ86YL7 162 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 Q8N6K4 173 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 KLHDC1Q8N7A1 406 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 BVESQ8NE79 360 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 OR8H1Q8NGG4 311 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 OR5AN1Q8NGI8 311 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 TCTEX1D2Q8WW35 142 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 GIMAP1Q8WWP7 306 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 FLYWCH2Q96CP2 140 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 RITA1Q96K30 269 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 PRELID3BQ9Y3B1 194 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 A3GALT2U3KPV4 340 aa9.09□□□□□ -0.95
LIMCH1-210ENST00000509454 FCGR3BO75015 233 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 CD3DP04234 171 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 AMY1AP04745 511 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 AMY2AP04746 511 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 CSF1P09603 554 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 DUTP33316 252 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 TAS2R19P59542 299 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 SRSF4Q08170 494 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 SPANXN2Q5MJ10 180 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 SLC35E3Q7Z769 313 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 Q8N2B8 174 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 C11orf44Q8N8P7 122 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 Q8N9W7 124 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 SMIM4Q8WVI0 70 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 WFDC12Q8WWY7 111 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 TSNAXQ99598 290 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 ZNF747Q9BV97 191 aa9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 TINAGL1Q9GZM7 467 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 LIN7CQ9NUP9 197 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-210ENST00000509454 CTDSPLO15194 276 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 SHOXO15266 292 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 RAB3DO95716 219 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 CRYZL1O95825 349 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 IGKV1-16P04430 117 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 RRASP10301 218 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 PGAM2P15259 253 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 PROK1P58294 105 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 TAGLNQ01995 201 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 SCGB2B2Q4G0G5 96 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 SHISA2Q6UWI4 295 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 DHRS11Q6UWP2 260 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 CENPVQ7Z7K6 275 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 FOXRED2Q8IWF2 684 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 TMEM229BQ8NBD8 167 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 ABHD5Q8WTS1 349 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 MOB3AQ96BX8 217 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 HARBI1Q96MB7 349 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 CLCC1Q96S66 551 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 GPHA2Q96T91 129 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 HSD17B10Q99714 261 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 FBXL15Q9H469 300 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 PLSCR3Q9NRY6 295 aa9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 METTL1Q9UBP6 276 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-210ENST00000509454 LINC00473A8K010 186 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 TBPP20226 339 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 S100GP29377 79 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 SSBP1Q04837 148 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 CATR1Q13166 79 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 VAX1Q5SQQ9 334 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 AADACL3Q5VUY0 350 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 STEAP1BQ6NZ63 245 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 ZNF818PQ6ZRF7 136 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 OR6Q1Q8NGQ2 317 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 OR51H1Q8NH63 302 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 BORCS5Q969J3 196 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 FXYD6Q9H0Q3 95 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 SERTAD4Q9NUC0 356 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 ZNF107Q9UII5 783 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 LINC00527Q9UJ94 153 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 STAB1Q9NY15 2570 aa9.06□□□□□ -0.96
LIMCH1-210ENST00000509454 DISC1C4P0D8 188 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 RRHO14718 337 aa9.05□□□□□ -0.96
LIMCH1-210ENST00000509454 KCNAB3O43448 404 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms