RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 IQCF6A8MYZ5 107 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 H0YIZ8 118 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 PPIHO43447 177 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 CD81P60033 236 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 FDCSPQ8NFU4 85 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 CCL13Q99616 98 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 DOK5Q9P104 306 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 ZNF98A6NK75 572 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 GATCO43716 136 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 YIF1AO95070 293 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 COX7A1P24310 79 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 GLIPR1P48060 266 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 SUMO1P63165 101 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 ZNF506Q5JVG8 444 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 PDPNQ86YL7 162 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 RAB1CQ92928 201 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 FAM3BP58499 235 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 TMEM105Q8N8V8 129 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 LRTM2Q8N967 370 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 PACRGQ96M98 296 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 IDI2-AS1Q9NZ38 188 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 KIAA1671Q9BY89 1806 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 THADAQ6YHU6 1953 aa9.15□□□□□ -0.94
LIMCH1-205ENST00000503057 TRBV6-7A0A0A0MS04 114 aa9.15□□□□□ -0.95
LIMCH1-205ENST00000503057 ZG16O60844 167 aa9.15□□□□□ -0.95
LIMCH1-205ENST00000503057 AAMDCQ9H7C9 122 aa9.15□□□□□ -0.95
LIMCH1-205ENST00000503057 SS18L1O75177 396 aaPredicted RBP9.15□□□□□ -0.95
LIMCH1-205ENST00000503057 IGHV1-2P23083 117 aa9.15□□□□□ -0.95
LIMCH1-205ENST00000503057 TNFSF10P50591 281 aa9.15□□□□□ -0.95
LIMCH1-205ENST00000503057 C10orf113Q5VZT2 155 aa9.15□□□□□ -0.95
LIMCH1-205ENST00000503057 OR2T6Q8NHC8 308 aa9.15□□□□□ -0.95
LIMCH1-205ENST00000503057 WDR61Q9GZS3 305 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-205ENST00000503057 LOC102723971A0A1B0GUV8 181 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 LOC105371267A0A1B0GV96 52 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 NCBP2LA6PVI3 153 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 BMPERQ8N8U9 685 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 OR1B1Q8NGR6 318 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 TMEM140Q9NV12 185 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 IGKV1D-8A0A087WSZ0 117 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 H0YL77 283 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 KRTDAPP60985 99 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 ORM2P19652 201 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 CSRP2Q16527 193 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 C9orf152Q5JTZ5 239 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 FGFBP3Q8TAT2 258 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 BLNKQ8WV28 456 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 TRAV20A0A0B4J274 112 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 HELTA6NFD8 242 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 KIAA1324LA8MWY0 1029 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 IZUMO4Q1ZYL8 232 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 STXBP6Q8NFX7 210 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 HIST1H2BAQ96A08 127 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 MS4A10Q96PG2 267 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 KIF26BQ2KJY2 2108 aa9.14□□□□□ -0.95
LIMCH1-205ENST00000503057 FREM3P0C091 2139 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 C12orf77C9JDV5 145 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 CCL8P80075 99 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 Q56UQ5 140 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 IL36RNQ9UBH0 155 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 DBX1A6NMT0 343 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 DNASE2O00115 360 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 GFRA1P56159 465 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 SUPT4H1P63272 117 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 PAX5Q02548 391 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 ZNF880Q6PDB4 577 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 PERPQ96FX8 193 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 FUT9Q9Y231 359 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 IGKV1-12A0A0C4DH73 117 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 IGKV1D-12P01611 117 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 CECR9P0C854 216 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 SSTR5P35346 364 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 TIMM23BQ5SRD1 257 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 VWA1Q6PCB0 445 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 KLHDC1Q8N7A1 406 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 SPSB4Q96A44 273 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 RHOVQ96L33 236 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 VAMP8Q9BV40 100 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 IGKV1-27A0A075B6S5 117 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 ZNF729A6NN14 1252 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 H0Y8G0 127 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 WNT9BO14905 357 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 HSBP1O75506 76 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 FAM157CP0CG43 387 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 OTX1P32242 354 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 GNB2P62879 340 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 LRRC75BQ2VPJ9 315 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 FAM90A1Q86YD7 464 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 WDR31Q8NA23 367 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 THYN1Q9P016 225 aa9.13□□□□□ -0.95
LIMCH1-205ENST00000503057 Q0VFX4 171 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 PSG7Q13046 419 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 OR4X1Q8NH49 305 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 IL19Q9UHD0 177 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 MMP7P09237 267 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 B3GALT5-AS1P59052 145 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 HSPE1P61604 102 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 LYZP61626 148 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 TMEM42Q69YG0 159 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 TOMM20LQ6UXN7 152 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 OR1L6Q8NGR2 347 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms