RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 SCGB1D2O95969 90 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 KRASP01116 189 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 IFNA7P01567 189 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 IGHV4-39P01824 125 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 GAPDHP04406 335 aaKnown RBP6.93□□□□□ -1.3
SF3A1-210ENST00000498259 SAA2P0DJI9 122 aaPredicted RBP6.93□□□□□ -1.3
SF3A1-210ENST00000498259 LYL1P12980 280 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 PRTN3P24158 256 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 P2RY1P47900 373 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 ZNF134P52741 427 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 ZNF137PP52743 207 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 NKX2-5P52952 324 aaPredicted RBP6.93□□□□□ -1.3
SF3A1-210ENST00000498259 DLX6P56179 175 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 LGALS4P56470 323 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 RPL23AP62750 156 aaKnown RBP6.93□□□□□ -1.3
SF3A1-210ENST00000498259 EIF4EBP1Q13541 118 aaPredicted RBP6.93□□□□□ -1.3
SF3A1-210ENST00000498259 RAB32Q13637 225 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 NMSQ5H8A3 153 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 ZNF787Q6DD87 383 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 CCDC144NLQ6NUI1 221 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 ZNF833PQ6ZTB9 187 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 ZNF767PQ75MW2 155 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 PDPNQ86YL7 162 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 TGIF2LXQ8IUE1 241 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 C9orf62Q8N4C0 152 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 ZNF525Q8N782 197 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 OR4C13Q8NGP0 309 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 OR4A16Q8NH70 328 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 OSR1Q8TAX0 266 aaPredicted RBP6.93□□□□□ -1.3
SF3A1-210ENST00000498259 BPESC1Q9GZL8 116 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 ARL6Q9H0F7 186 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 PARP12Q9H0J9 701 aaKnown RBP6.93□□□□□ -1.3
SF3A1-210ENST00000498259 MBD2Q9UBB5 411 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 TNFSF18Q9UNG2 199 aa6.93□□□□□ -1.3
SF3A1-210ENST00000498259 ROS1P08922 2347 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 CFAP46Q8IYW2 2715 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 IGHV2-26A0A0B4J1V2 119 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 MARCH11A6NNE9 402 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 LEUTXA8MZ59 168 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 OOSP1A8MZH6 123 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 H7C2Y5 167 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 TSC22D2O75157 780 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 GATA3P23771 443 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 HTR1DP28221 377 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 TAS2R30P59541 319 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 RAB14P61106 215 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 SRSF1Q07955 248 aaKnown RBP eCLIP6.92□□□□□ -1.3
SF3A1-210ENST00000498259 IL15RAQ13261 267 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 NDUFA5Q16718 116 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 LGALSLQ3ZCW2 172 aaPredicted RBP6.92□□□□□ -1.3
SF3A1-210ENST00000498259 ZNF585BQ52M93 769 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 TMUB2Q71RG4 321 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 SLC51BQ86UW2 128 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 FOXRED2Q8IWF2 684 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 MRPL41Q8IXM3 137 aaKnown RBP6.92□□□□□ -1.3
SF3A1-210ENST00000498259 LRRC75A-AS1Q8N1F1 130 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 KCNRGQ8N5I3 272 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 OR11H6Q8NGC7 330 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 OR4D5Q8NGN0 318 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 OR4A5Q8NH83 315 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 LHFPL5Q8TAF8 219 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 C10orf105Q8TEF2 133 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 LHX4Q969G2 390 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 RPEQ96AT9 228 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 FLYWCH2Q96CP2 140 aaKnown RBP6.92□□□□□ -1.3
SF3A1-210ENST00000498259 R3HDM4Q96D70 268 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 AQP10Q96PS8 301 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 RNF5Q99942 180 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 ARPC5LQ9BPX5 153 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 UNKLQ9H9P5 680 aaKnown RBP6.92□□□□□ -1.3
SF3A1-210ENST00000498259 LPAR2Q9HBW0 351 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 SLC35D1Q9NTN3 355 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 PRR13Q9NZ81 148 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 POLR3KQ9Y2Y1 108 aaPredicted RBP6.92□□□□□ -1.3
SF3A1-210ENST00000498259 LSM5Q9Y4Y9 91 aaKnown RBP6.92□□□□□ -1.3
SF3A1-210ENST00000498259 WSB1Q9Y6I7 421 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 DOPEY1Q5JWR5 2465 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 PKDREJQ9NTG1 2253 aa6.92□□□□□ -1.3
SF3A1-210ENST00000498259 DSCAMO60469 2012 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 EPG5Q9HCE0 2579 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 ABCA4P78363 2273 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 TRAV14DV4A0A0A6YYC5 116 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 BORCS7-ASMTA0A0B4J1R7 106 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 IGHV2-70DA0A0C4DH43 119 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 MPTX1A8MV57 137 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 BUB1B-PAK6H3BSN5 160 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 MMP23AO75900 390 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 JTBO76095 146 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 IGHV3-7P01780 117 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 MBPP02686 304 aaPredicted RBP6.91□□□□□ -1.3
SF3A1-210ENST00000498259 FGF2P09038 288 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 RNF224P0DH78 156 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 RPL12P30050 165 aaKnown RBP6.91□□□□□ -1.3
SF3A1-210ENST00000498259 LGALS7P47929 136 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 ID3Q02535 119 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 BAXQ07812 192 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 ZNF816Q0VGE8 651 aaPredicted RBP6.91□□□□□ -1.3
SF3A1-210ENST00000498259 OPCMLQ14982 345 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 HLA-DRB5Q30154 266 aa6.91□□□□□ -1.3
SF3A1-210ENST00000498259 MIDNQ504T8 468 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms