RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 LAMB1P07942 1786 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 RP1L1Q8IWN7 2480 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-212ENST00000491769 OR4C45A6NMZ5 311 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 CDS2O95674 445 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 TNFSF10P50591 281 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 AWAT1Q58HT5 328 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 DNLZQ5SXM8 178 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 TMEM186Q96B77 213 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 HOXB1P14653 301 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-212ENST00000491769 BSPH1Q075Z2 132 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 FAM74A3Q4VXF1 159 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 ABHD1Q96SE0 405 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 C11orf91Q3C1V1 193 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 PPP1R32Q7Z5V6 425 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 SCMH1Q96GD3 660 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 VGLL1Q99990 258 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 AKIRIN1Q9H9L7 192 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-212ENST00000491769 A0A1W2PQM1 296 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 CRHP06850 196 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 TDGF1P13385 188 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 CDX1P47902 265 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-212ENST00000491769 HMGA2P52926 109 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 MBNL2Q5VZF2 373 aaKnown RBP11.28□□□□□ -0.6
COL6A3-212ENST00000491769 VKORC1L1Q8N0U8 176 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 LSM10Q969L4 123 aaKnown RBP11.28□□□□□ -0.6
COL6A3-212ENST00000491769 ALS2Q96Q42 1657 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 ALKBH7Q9BT30 221 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-212ENST00000491769 CBY1Q9Y3M2 126 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 USP54Q70EL1 1684 aa11.27□□□□□ -0.6
COL6A3-212ENST00000491769 DNAJC13O75165 2243 aa11.27□□□□□ -0.6
COL6A3-212ENST00000491769 IGKV1D-33P01593 117 aa11.27□□□□□ -0.6
COL6A3-212ENST00000491769 IGKV1-33P01594 117 aa11.27□□□□□ -0.6
COL6A3-212ENST00000491769 MESP2Q0VG99 397 aa11.27□□□□□ -0.6
COL6A3-212ENST00000491769 STHQ8IWL8 128 aa11.27□□□□□ -0.6
COL6A3-212ENST00000491769 RGP1Q92546 391 aaPredicted RBP11.27□□□□□ -0.6
COL6A3-212ENST00000491769 KIR2DL4Q99706 377 aa11.27□□□□□ -0.6
COL6A3-212ENST00000491769 TMEM106BQ9NUM4 274 aa11.27□□□□□ -0.6
COL6A3-212ENST00000491769 PGPEP1Q9NXJ5 209 aa11.27□□□□□ -0.6
COL6A3-212ENST00000491769 ZNF638Q14966 1978 aaKnown RBP11.27□□□□□ -0.61
COL6A3-212ENST00000491769 A0A0U1RQV5 110 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 TCRBV4S1A1TA0A5B7 111 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 AMY1AP04745 511 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 IL4P05112 153 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 IBA57Q5T440 356 aaKnown RBP11.27□□□□□ -0.61
COL6A3-212ENST00000491769 HOGA1Q86XE5 327 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 ISOC2Q96AB3 205 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 TOMM7Q9P0U1 55 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 ZNF107Q9UII5 783 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-212ENST00000491769 KLHDC2Q9Y2U9 406 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 CACNA1CQ13936 2221 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 TSPAN2O60636 221 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 IGHV3-11P01762 117 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 MALP21145 153 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 SNAI3Q3KNW1 292 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 MIC13Q5XKP0 118 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 A0A0G2JLM5 398 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 DXOO77932 396 aaKnown RBP11.27□□□□□ -0.61
COL6A3-212ENST00000491769 TRGC1P0CF51 173 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 GTSCR1Q86UQ5 136 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 SRSF12Q8WXF0 261 aaKnown RBP11.27□□□□□ -0.61
COL6A3-212ENST00000491769 CENPVL1A0A0U1RR11 272 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 PITX3O75364 302 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 CFAP161Q6P656 301 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 FOXC2Q99958 501 aa11.27□□□□□ -0.61
COL6A3-212ENST00000491769 ZNF729A6NN14 1252 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-212ENST00000491769 LTBRP36941 435 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 EFNB2P52799 333 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 RPS20P60866 119 aaKnown RBP11.26□□□□□ -0.61
COL6A3-212ENST00000491769 C8orf46Q8TAG6 207 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 GLIPR1P48060 266 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 TMEM177Q53S58 311 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 KNL1Q8NG31 2342 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 CD1AP06126 327 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 ZNF25P17030 456 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-212ENST00000491769 MMP16P51512 607 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 C3orf36Q3SXR2 165 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 COLCA1Q6ZS62 124 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 VN1R17PQ8TDU5 208 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 REPIN1Q9BWE0 567 aaKnown RBP11.26□□□□□ -0.61
COL6A3-212ENST00000491769 BEX4Q9NWD9 120 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-212ENST00000491769 TNRC6CQ9HCJ0 1690 aaKnown RBP11.26□□□□□ -0.61
COL6A3-212ENST00000491769 KLK13Q9UKR3 277 aa11.26□□□□□ -0.61
COL6A3-212ENST00000491769 DNAL4O96015 105 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 NCMAPQ5T1S8 102 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 PPP1R27Q86WC6 154 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 DNASE2BQ8WZ79 361 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 NPFFR1Q9GZQ6 430 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 RECKO95980 971 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 ATP6V0CP27449 155 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 WDFY2Q96P53 400 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 DLL3Q9NYJ7 618 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 TRPM6Q9BX84 2022 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 MOSP00540 346 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 UNC119Q13432 240 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 HIST1H4GQ99525 98 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 H0Y980 276 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 FAM57AQ8TBR7 257 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 WNT5BQ9H1J7 359 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 FBXL7Q9UJT9 491 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 CLEC19AQ6UXS0 136 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms