RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 OR5D13Q8NGL4 314 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR4A4PQ8NGN8 299 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR9I1Q8NGQ6 314 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR1J4Q8NGS1 313 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR4F5Q8NH21 305 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR51F2Q8NH61 342 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 FLVCR1-AS1Q8TAF5 88 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF675Q8TD23 568 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 GTSF1Q8WW33 167 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RGP1Q92546 391 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TFGQ92734 400 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RAB8BQ92930 207 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H2BHQ93079 126 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TSLPQ969D9 159 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ARL11Q969Q4 196 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RERGQ96A58 199 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 PNPLA2Q96AD5 504 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 GPR146Q96CH1 333 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CXorf40BQ96DE9 158 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 DYNLL2Q96FJ2 89 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SMARCD1Q96GM5 515 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SMIM10Q96HG1 83 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 JSRP1Q96MG2 331 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RNF157Q96PX1 679 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CIB3Q96Q77 187 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR7D2Q96RA2 312 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TRIB3Q96RU7 358 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 LYSMD1Q96S90 227 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 GPA33Q99795 319 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H2BNQ99877 126 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H2BMQ99879 126 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 MRPL57Q9BQC6 102 aaKnown RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 C20orf144Q9BQM9 153 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SULT4A1Q9BR01 284 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 GINS3Q9BRX5 216 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF649Q9BS31 505 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 C20orf24Q9BUV8 137 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 MS4A8Q9BY19 250 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 DEFB126Q9BYW3 111 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 LINC00470Q9BZP3 86 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR8D2Q9GZM6 311 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 PPDPFQ9H3Y8 114 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 Q9HAA7 133 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 MEAF6Q9HAF1 191 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM27Q9HBJ8 222 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 NOX3Q9HBY0 568 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SLC25A19Q9HC21 320 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 EXOSC4Q9NPD3 245 aaKnown RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 MMP26Q9NRE1 261 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM38BQ9NVV0 291 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 NECAP2Q9NVZ3 263 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TXNL4BQ9NX01 149 aaKnown RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SLC2A8Q9NY64 477 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 FKBP11Q9NYL4 201 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR5AC2Q9NZP5 309 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 PIPOXQ9P0Z9 390 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RPS6KB2Q9UBS0 482 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CLN8Q9UBY8 286 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CACFD1Q9UGQ2 172 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF391Q9UJN7 358 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 MRPS33Q9Y291 106 aaKnown RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ASF1AQ9Y294 204 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SLC17A4Q9Y2C5 497 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF337Q9Y3M9 751 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 MXRA5Q9NR99 2828 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 BSNQ9UPA5 3926 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 LCTP09848 1927 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 VWFP04275 2813 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 PRRC2CQ9Y520 2896 aaKnown RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 RYR1P21817 5038 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 HMCN1Q96RW7 5635 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 FOCADQ5VW36 1801 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 NAV1Q8NEY1 1877 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 IGHV3OR16-12A0A075B7B8 117 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ODAMA1E959 279 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 SMIM9A6NGZ8 99 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ARL5CA6NH57 179 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 OR5B21A6NL26 309 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 SRRM4A7MD48 611 aaKnown RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 HMSDA8MTL9 139 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 IDSB3KWA1 339 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 C9JQL5 133 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 F5H5P2 479 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 H0YIG0 161 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 K7EPK0 472 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 UPK1AO00322 258 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 SAP18O00422 153 aaKnown RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF593O00488 134 aaPredicted RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 NME4O00746 187 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 GNGT2O14610 69 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 CHEK1O14757 476 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 GEMIN2O14893 280 aaKnown RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 RBFOX2O43251 390 aaKnown RBP eCLIP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 FCMRO60667 390 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ALOX12BO75342 701 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 UPK3AO75631 287 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 STK16O75716 305 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TRAPPC6AO75865 159 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TNFSF13O75888 250 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 LRATO95237 230 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms