RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 PMS2P5A8MQ11 134 aa15□□□□□ -0.01
VIM-206ENST00000487938 IFNA1P01562 189 aa15□□□□□ -0.01
VIM-206ENST00000487938 IGKV3-15P01624 115 aa15□□□□□ -0.01
VIM-206ENST00000487938 MDKP21741 143 aaPredicted RBP15□□□□□ -0.01
VIM-206ENST00000487938 TFF3Q07654 80 aa15□□□□□ -0.01
VIM-206ENST00000487938 FOXF2Q12947 444 aa15□□□□□ -0.01
VIM-206ENST00000487938 H2BFWTQ7Z2G1 175 aa15□□□□□ -0.01
VIM-206ENST00000487938 TRIP6Q15654 476 aaKnown RBP15□□□□□ -0.01
VIM-206ENST00000487938 Q3ZCU0 254 aa15□□□□□ -0.01
VIM-206ENST00000487938 ACSF3Q4G176 576 aaPredicted RBP15□□□□□ -0.01
VIM-206ENST00000487938 OR10P1Q8NGE3 313 aa15□□□□□ -0.01
VIM-206ENST00000487938 ABHD5Q8WTS1 349 aa15□□□□□ -0.01
VIM-206ENST00000487938 FRZBQ92765 325 aa15□□□□□ -0.01
VIM-206ENST00000487938 CECR9P0C854 216 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 DEFA4P12838 97 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 EDDM3AQ14507 147 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 C1orf87Q8N0U7 546 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 OR10G9Q8NGN4 311 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 OR10G7Q8NGN6 311 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 SMIM7Q9BQ49 75 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 TMEM147Q9BVK8 224 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 TIMM9Q9Y5J7 89 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 CFAP47Q6ZTR5 3102 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 IGHG3P01860 377 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 TRGC1P0CF51 173 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 ADIRFQ15847 76 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 FFAR4Q5NUL3 377 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 ALKBH2Q6NS38 261 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 EDARADDQ8WWZ3 215 aa14.99□□□□□ -0.01
VIM-206ENST00000487938 RPUSD4Q96CM3 377 aaKnown RBP14.99□□□□□ -0.01
VIM-206ENST00000487938 TRAV20A0A0B4J274 112 aa14.98□□□□□ -0.01
VIM-206ENST00000487938 CLDN14O95500 239 aa14.98□□□□□ -0.01
VIM-206ENST00000487938 RD3LP0DJH9 198 aa14.98□□□□□ -0.01
VIM-206ENST00000487938 S100PP25815 95 aa14.98□□□□□ -0.01
VIM-206ENST00000487938 RND2P52198 227 aa14.98□□□□□ -0.01
VIM-206ENST00000487938 MEF2BQ02080 365 aaPredicted RBP14.98□□□□□ -0.01
VIM-206ENST00000487938 GUSBP1Q15486 140 aa14.98□□□□□ -0.01
VIM-206ENST00000487938 CENPVQ7Z7K6 275 aaPredicted RBP14.98□□□□□ -0.01
VIM-206ENST00000487938 CD177Q8N6Q3 437 aa14.98□□□□□ -0.01
VIM-206ENST00000487938 TMEM242Q9NWH2 141 aa14.98□□□□□ -0.01
VIM-206ENST00000487938 GAR1Q9NY12 217 aaKnown RBP14.98□□□□□ -0.01
VIM-206ENST00000487938 RAB29O14966 203 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 SOD3P08294 240 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 S100A2P29034 98 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 NKX6-1P78426 367 aaPredicted RBP14.97□□□□□ -0.01
VIM-206ENST00000487938 ATP6V1FQ16864 119 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 PYY3Q5JQD4 70 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 PRR7Q8TB68 274 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 TRBV23-1A0A0A0MS06 115 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 IGHV3-13P01766 116 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 IGHV3-7P01780 117 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 GCH1P30793 250 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 CDPF1Q6NVV7 123 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 NECAP1Q8NC96 275 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 LRRC29Q8WV35 223 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 GPR61Q9BZJ8 451 aa14.97□□□□□ -0.01
VIM-206ENST00000487938 PSMB3P49720 205 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 TMEM241Q24JQ0 296 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 ZNF718Q3SXZ3 478 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 NCR3LG1Q68D85 454 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 OR10D4PQ8NGN7 298 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 LURAP1Q96LR2 239 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 QTRT1Q9BXR0 403 aaKnown RBP14.96□□□□□ -0.01
VIM-206ENST00000487938 NAT8Q9UHE5 227 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 CTXND1A0A1B0GTU2 59 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 MARCH11A6NNE9 402 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 COX5AP20674 150 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 SMIM21Q3B7S5 101 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 OR4F5Q8NH21 305 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 RAB24Q969Q5 203 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 OR4F4Q96R69 305 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 TAAR6Q96RI8 345 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 AGMATQ9BSE5 352 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 NPCDR1Q9BY65 106 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 FAM234AQ9H0X4 552 aa14.96□□□□□ -0.01
VIM-206ENST00000487938 HEATR1Q9H583 2144 aaKnown RBP14.96□□□□□ -0.02
VIM-206ENST00000487938 IGHV2-70P01814 119 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 KITLGP21583 273 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 PRDX2P32119 198 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 SSX9Q7RTT3 188 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 C16orf82Q7Z2V1 217 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 OR2Z1Q8NG97 314 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 OR13D1Q8NGV5 346 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 OPN3Q9H1Y3 402 aaPredicted RBP14.95□□□□□ -0.02
VIM-206ENST00000487938 C15orf65H3BRN8 121 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 SPINT2O43291 252 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 OR9G9P0C7N8 305 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 EGR1P18146 543 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 CLEC12BQ2HXU8 276 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 ZNF66Q6ZN08 573 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 ZNF709Q8N972 641 aa14.95□□□□□ -0.02
VIM-206ENST00000487938 MRPL37Q9BZE1 423 aaKnown RBP14.95□□□□□ -0.02
VIM-206ENST00000487938 ACTR3CQ9C0K3 210 aaPredicted RBP14.95□□□□□ -0.02
VIM-206ENST00000487938 IGHV2OR16-5A0A0B4J2B6 119 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 IGHV1-18A0A0C4DH31 117 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 IFNL4K9M1U5 179 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 PPP1R2P9O14990 202 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 PROP1O75360 226 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 OPN1MWP04001 364 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 OPN1MW2P0DN77 364 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms