RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ZNF45Q02386 682 aa11.51□□□□□ -0.57
MCF2L-228ENST00000487354 UNC119Q13432 240 aa11.51□□□□□ -0.57
MCF2L-228ENST00000487354 TMPRSS11AQ6ZMR5 421 aa11.51□□□□□ -0.57
MCF2L-228ENST00000487354 C5orf30Q96GV9 206 aa11.51□□□□□ -0.57
MCF2L-228ENST00000487354 USMG5Q96IX5 58 aa11.51□□□□□ -0.57
MCF2L-228ENST00000487354 SLC29A1Q99808 456 aa11.51□□□□□ -0.57
MCF2L-228ENST00000487354 UQCC2Q9BRT2 126 aa11.51□□□□□ -0.57
MCF2L-228ENST00000487354 HDHD3Q9BSH5 251 aaPredicted RBP11.51□□□□□ -0.57
MCF2L-228ENST00000487354 SLC2A8Q9NY64 477 aa11.51□□□□□ -0.57
MCF2L-228ENST00000487354 PEMTQ9UBM1 199 aa11.51□□□□□ -0.57
MCF2L-228ENST00000487354 ZNF230Q9UIE0 474 aaPredicted RBP11.51□□□□□ -0.57
MCF2L-228ENST00000487354 IGKV1-6A0A0C4DH72 117 aa11.5□□□□□ -0.57
MCF2L-228ENST00000487354 LOC100130705A0A1B0GUX0 176 aa11.5□□□□□ -0.57
MCF2L-228ENST00000487354 SRRM4A7MD48 611 aaKnown RBP11.5□□□□□ -0.57
MCF2L-228ENST00000487354 DYNC1I1O14576 645 aa11.5□□□□□ -0.57
MCF2L-228ENST00000487354 PMS2P11Q13670 270 aa11.5□□□□□ -0.57
MCF2L-228ENST00000487354 NKAIN3Q8N8D7 197 aa11.5□□□□□ -0.57
MCF2L-228ENST00000487354 DDB2Q92466 427 aa11.5□□□□□ -0.57
MCF2L-228ENST00000487354 WDR89Q96FK6 387 aaPredicted RBP11.5□□□□□ -0.57
MCF2L-228ENST00000487354 TMEM68Q96MH6 324 aa11.5□□□□□ -0.57
MCF2L-228ENST00000487354 TM2D1Q9BX74 207 aa11.5□□□□□ -0.57
MCF2L-228ENST00000487354 COA4Q9NYJ1 87 aa11.5□□□□□ -0.57
MCF2L-228ENST00000487354 DIMT1Q9UNQ2 313 aaKnown RBP11.5□□□□□ -0.57
MCF2L-228ENST00000487354 AIREO43918 545 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 CEACAM6P40199 344 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 HLA-DRB3P79483 266 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 QRFPP83859 136 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 TATDN3Q17R31 274 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 MOB1BQ7L9L4 216 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 KCNG3Q8TAE7 436 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 SNAPC3Q92966 411 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 NEDD4LQ96PU5 975 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 AKIP1Q9NQ31 210 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 GHRLQ9UBU3 117 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 SELENOKQ9Y6D0 94 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 FAT2Q9NYQ8 4349 aa11.49□□□□□ -0.57
MCF2L-228ENST00000487354 TRBV9A0A0B4J1U6 114 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 NUPR2A6NF83 97 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 C2orf70A6NJV1 201 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 DEDDO75618 318 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 PRH1P02810 166 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 SCTP09683 121 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 KIR2DS2P43631 304 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 LGALS7P47929 136 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 EXOSC2Q13868 293 aaKnown RBP11.48□□□□□ -0.57
MCF2L-228ENST00000487354 SETD6Q8TBK2 473 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 EDARADDQ8WWZ3 215 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 SLC35D1Q9NTN3 355 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 AK3Q9UIJ7 227 aa11.48□□□□□ -0.57
MCF2L-228ENST00000487354 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.47□□□□□ -0.57
MCF2L-228ENST00000487354 A0A0J9YWU9 116 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 PNMA8CA0A1B0GUJ8 204 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 CXorf65A6NEN9 183 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 MSGN1A6NI15 193 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 FOXI3A8MTJ6 420 aaPredicted RBP11.47□□□□□ -0.57
MCF2L-228ENST00000487354 M0R1X1 148 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 APOA2P02652 100 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 FOLR2P14207 255 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 ZBTB25P24278 435 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 RHOGP84095 191 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 INSL4Q14641 139 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 GUCA2BQ16661 112 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 CEMP1Q6PRD7 247 aaPredicted RBP11.47□□□□□ -0.57
MCF2L-228ENST00000487354 LRRTM1Q86UE6 522 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 CACNG8Q8WXS5 425 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 TMEM59Q9BXS4 323 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 CHMP1AQ9HD42 196 aaPredicted RBP11.47□□□□□ -0.57
MCF2L-228ENST00000487354 EXOSC1Q9Y3B2 195 aaKnown RBP11.47□□□□□ -0.57
MCF2L-228ENST00000487354 PKHD1P08F94 4074 aa11.47□□□□□ -0.57
MCF2L-228ENST00000487354 A0A0B4J203 849 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 TMEM14DPA8MWL7 114 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 PPP5D1E7EU14 171 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 OR9G9P0C7N8 305 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 TMEM177Q53S58 311 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 C1orf100Q5SVJ3 147 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 WFDC3Q8IUB2 231 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 TMEM61Q8N0U2 210 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 DYNLRB2Q8TF09 96 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 HARBI1Q96MB7 349 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 GGTLC1Q9BX51 225 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 Q9N2K0 584 aa11.46□□□□□ -0.57
MCF2L-228ENST00000487354 DNAH2Q9P225 4427 aa11.46□□□□□ -0.58
MCF2L-228ENST00000487354 FAM223BA6NKX1 122 aa11.45□□□□□ -0.58
MCF2L-228ENST00000487354 HLA-AP01891 365 aaKnown RBP11.45□□□□□ -0.58
MCF2L-228ENST00000487354 UBBP0CG47 229 aa11.45□□□□□ -0.58
MCF2L-228ENST00000487354 MYL12AP19105 171 aa11.45□□□□□ -0.58
MCF2L-228ENST00000487354 TNFRSF9Q07011 255 aa11.45□□□□□ -0.58
MCF2L-228ENST00000487354 FAM223AQ8IWN6 122 aa11.45□□□□□ -0.58
MCF2L-228ENST00000487354 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.45□□□□□ -0.58
MCF2L-228ENST00000487354 SRSF12Q8WXF0 261 aaKnown RBP11.45□□□□□ -0.58
MCF2L-228ENST00000487354 LPAR5Q9H1C0 372 aa11.45□□□□□ -0.58
MCF2L-228ENST00000487354 RDH8Q9NYR8 311 aa11.45□□□□□ -0.58
MCF2L-228ENST00000487354 ZNF221Q9UK13 617 aa11.45□□□□□ -0.58
MCF2L-228ENST00000487354 SOCS1O15524 211 aa11.44□□□□□ -0.58
MCF2L-228ENST00000487354 CD1AP06126 327 aa11.44□□□□□ -0.58
MCF2L-228ENST00000487354 CD37P11049 281 aa11.44□□□□□ -0.58
MCF2L-228ENST00000487354 PRSS8Q16651 343 aa11.44□□□□□ -0.58
MCF2L-228ENST00000487354 IDO2Q6ZQW0 420 aa11.44□□□□□ -0.58
MCF2L-228ENST00000487354 LYG2Q86SG7 212 aa11.44□□□□□ -0.58
MCF2L-228ENST00000487354 GGHQ92820 318 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms