RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 HBG1P69891 147 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 HBG2P69892 147 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 ARL16Q0P5N6 197 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 ZNF273Q14593 569 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 ADIRFQ15847 76 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 PDLIM3Q53GG5 364 aaPredicted RBP11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 ZNF497Q6ZNH5 498 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 OR10P1Q8NGE3 313 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 RBKSQ9H477 322 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 LPAR2Q9HBW0 351 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 SLC25A15Q9Y619 301 aa11.49□□□□□ -0.57
CCDC88A-211ENST00000471947 H0Y980 276 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 PLAUP00749 431 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 FAM157CP0CG43 387 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 MPZP25189 248 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 GCSAMLQ5JQS6 135 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 DTD1Q8TEA8 209 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 CACFD1Q9UGQ2 172 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 STRAPQ9Y3F4 350 aaKnown RBP11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 UCP1P25874 307 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 KCNJ3P48549 501 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 SULT1A2P50226 295 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 DOK5Q9P104 306 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 RNF7Q9UBF6 113 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 PRELID3BQ9Y3B1 194 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 ARPC4-TTLL3A0A0A6YYG9 625 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 IGKV1-39P01597 117 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 IGKV1D-39P04432 117 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 SSTP61278 116 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 MRPS11P82912 194 aaKnown RBP11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 CYB561D1Q8N8Q1 229 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 OR10X1Q8NGY0 326 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 PLSCR4Q9NRQ2 329 aa11.48□□□□□ -0.57
CCDC88A-211ENST00000471947 IGKV1D-17A0A075B6S4 117 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 CA11O75493 328 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 TOX4O94842 621 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 QTRT1Q9BXR0 403 aaKnown RBP11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 RPRMQ9NS64 109 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 ATPIF1Q9UII2 106 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 RPH3ALQ9UNE2 315 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 A0A1W2PPV4 95 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 IGKV3-15P01624 115 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 CD24P25063 80 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 SNCAP37840 140 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 RPL31P62899 125 aaKnown RBP11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 FAM90A1Q86YD7 464 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 ANAPC10Q9UM13 185 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 MARCH11A6NNE9 402 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 RNF212BA8MTL3 300 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 VSTM5A8MXK1 200 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 PLGLAQ15195 96 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 ASB13Q8WXK3 278 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 ACY3Q96HD9 319 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 MED9Q9NWA0 146 aa11.47□□□□□ -0.57
CCDC88A-211ENST00000471947 TRAV38-1A0A0B4J264 116 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 MMP23AO75900 390 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 FFAR4Q5NUL3 377 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 SAXO1Q8IYX7 474 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 OR4F5Q8NH21 305 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 CA5BP1Q8WTZ4 195 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 OR4F4Q96R69 305 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 CALYQ9NYX4 217 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 TUBD1Q9UJT1 453 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 TFF3Q07654 80 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 MST1LQ2TV78 715 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 ZNF343Q6P1L6 599 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 Q6ZS92 163 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 RHOVQ96L33 236 aa11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 LYRM2Q9NU23 88 aaPredicted RBP11.46□□□□□ -0.57
CCDC88A-211ENST00000471947 C7orf77A4D0Y5 90 aa11.46□□□□□ -0.58
CCDC88A-211ENST00000471947 REG1AP05451 166 aa11.46□□□□□ -0.58
CCDC88A-211ENST00000471947 SLC25A6P12236 298 aa11.46□□□□□ -0.58
CCDC88A-211ENST00000471947 GATA2P23769 480 aaPredicted RBP11.46□□□□□ -0.58
CCDC88A-211ENST00000471947 RBPJQ06330 500 aa11.46□□□□□ -0.58
CCDC88A-211ENST00000471947 ZNF585BQ52M93 769 aa11.46□□□□□ -0.58
CCDC88A-211ENST00000471947 CLRN3Q8NCR9 226 aa11.46□□□□□ -0.58
CCDC88A-211ENST00000471947 OR4D5Q8NGN0 318 aa11.46□□□□□ -0.58
CCDC88A-211ENST00000471947 A8MXE2 369 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM157AC9JC47 383 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 OR8U8P0C7N1 319 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 MDH2P40926 338 aaKnown RBP11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 DVL1P1P54792 670 aaPredicted RBP11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 TIMM23BQ5SRD1 257 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 C11orf53Q8IXP5 236 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 OR5D13Q8NGL4 314 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 GATAD1Q8WUU5 269 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 GP6Q9HCN6 339 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 SULT1A1P50225 295 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 UCP3P55916 312 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 STUMQ69YW2 141 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 BARX1Q9HBU1 254 aaPredicted RBP11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 COL5A1P20908 1838 aaPredicted RBP11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 TRIM77I1YAP6 450 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 CRYBA1P05813 215 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 TLE4Q04727 773 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 MOB1BQ7L9L4 216 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 UBAC2Q8NBM4 344 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 WFIKKN1Q96NZ8 548 aa11.45□□□□□ -0.58
CCDC88A-211ENST00000471947 ATP5SQ99766 215 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms