RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 CD1BP29016 333 aa11.83□□□□□ -0.52
COL9A3-209ENST00000469852 IFITM3Q01628 133 aa11.83□□□□□ -0.52
COL9A3-209ENST00000469852 HNF4GQ14541 408 aa11.83□□□□□ -0.52
COL9A3-209ENST00000469852 TMEM86BQ8N661 226 aa11.83□□□□□ -0.52
COL9A3-209ENST00000469852 OR5AN1Q8NGI8 311 aa11.83□□□□□ -0.52
COL9A3-209ENST00000469852 OR5R1Q8NH85 324 aa11.83□□□□□ -0.52
COL9A3-209ENST00000469852 TERB2Q8NHR7 220 aa11.83□□□□□ -0.52
COL9A3-209ENST00000469852 MARCH1Q8TCQ1 289 aa11.83□□□□□ -0.52
COL9A3-209ENST00000469852 DDB2Q92466 427 aa11.83□□□□□ -0.52
COL9A3-209ENST00000469852 CCDC32Q9BV29 185 aa11.83□□□□□ -0.52
COL9A3-209ENST00000469852 A0A0A6YYJ9 748 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 CLDN34H7C241 214 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 GPR137BO60478 399 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 IFNA2P01563 188 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 RNASE1P07998 156 aaKnown RBP11.82□□□□□ -0.52
COL9A3-209ENST00000469852 PI3P19957 117 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 BTCP35070 178 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 INPP1P49441 399 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 ARHGDIBP52566 201 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 BRWD1-AS2P59051 145 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 AP3S2P59780 193 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 EBI3Q14213 229 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 HES1Q14469 280 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 IDO2Q6ZQW0 420 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 THNSL2Q86YJ6 484 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 Q8N6K4 173 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 EAF1Q96JC9 268 aaPredicted RBP11.82□□□□□ -0.52
COL9A3-209ENST00000469852 RSRP1Q9BUV0 290 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 SLC2A8Q9NY64 477 aa11.82□□□□□ -0.52
COL9A3-209ENST00000469852 BTBD17A6NE02 478 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 SLC22A5O76082 557 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 IGKV1-16P04430 117 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 PGAM2P15259 253 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 TMEM11P17152 192 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 CNTFRP26992 372 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 THBS3P49746 956 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 UCP3P55916 312 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 MSMO1Q15800 293 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 PHLDA2Q53GA4 152 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 OR2B11Q5JQS5 317 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 BVESQ8NE79 360 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 JMJD8Q96S16 334 aa11.81□□□□□ -0.52
COL9A3-209ENST00000469852 FAM181BA6NEQ2 426 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 GPR31O00270 319 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 PGLYRP1O75594 196 aaPredicted RBP11.8□□□□□ -0.52
COL9A3-209ENST00000469852 RLN1P04808 185 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 FAM106CPP0CH98 169 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 FAUP35544 74 aaKnown RBP11.8□□□□□ -0.52
COL9A3-209ENST00000469852 CCR6P51684 374 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 C16orf87Q6PH81 154 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 KCTD9Q7L273 389 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 SLC38A6Q8IZM9 456 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 OR2T10Q8NGZ9 312 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 TCTEX1D2Q8WW35 142 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 AKR1E2Q96JD6 320 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 PRRT1Q99946 306 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 SLC25A33Q9BSK2 321 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 SLC35D1Q9NTN3 355 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 TBC1D24Q9ULP9 559 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 VSIG4Q9Y279 399 aa11.8□□□□□ -0.52
COL9A3-209ENST00000469852 SH2D7A6NKC9 451 aaPredicted RBP11.79□□□□□ -0.52
COL9A3-209ENST00000469852 H7C2Y5 167 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 PEX14O75381 377 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 UPK1BO75841 260 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 MOSP00540 346 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 F2RL1P55085 397 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 ZNF66Q6ZN08 573 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 ZBTB34Q8NCN2 500 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 OR51H1Q8NH63 302 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 DEDD2Q8WXF8 326 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 RBM14Q96PK6 669 aaKnown RBP11.79□□□□□ -0.52
COL9A3-209ENST00000469852 HSD17B10Q99714 261 aaKnown RBP11.79□□□□□ -0.52
COL9A3-209ENST00000469852 RTBDNQ9BSG5 229 aaPredicted RBP11.79□□□□□ -0.52
COL9A3-209ENST00000469852 C5orf66Q9H5L9 145 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 SLC2A9Q9NRM0 540 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 PLSCR3Q9NRY6 295 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 SCP2D1Q9UJQ7 156 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 GPR132Q9UNW8 380 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 WASHC3Q9Y3C0 194 aa11.79□□□□□ -0.52
COL9A3-209ENST00000469852 TRIM77I1YAP6 450 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 RAMP3O60896 148 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 FCGR3BO75015 233 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 OR2F2O95006 317 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 APOA2P02652 100 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 AMY1AP04745 511 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 MC5RP33032 325 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 RELBQ01201 579 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 LPCAT3Q6P1A2 487 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 Q6ZS46 218 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 TBC1D26Q86UD7 250 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.78□□□□□ -0.52
COL9A3-209ENST00000469852 ADTRPQ96IZ2 230 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 PITPNC1Q9UKF7 332 aa11.78□□□□□ -0.52
COL9A3-209ENST00000469852 SRRM4A7MD48 611 aaKnown RBP11.77□□□□□ -0.53
COL9A3-209ENST00000469852 RNF212BA8MTL3 300 aa11.77□□□□□ -0.53
COL9A3-209ENST00000469852 LYRM1O43325 122 aa11.77□□□□□ -0.53
COL9A3-209ENST00000469852 CRYZL1O95825 349 aa11.77□□□□□ -0.53
COL9A3-209ENST00000469852 CTSDP07339 412 aaPredicted RBP11.77□□□□□ -0.53
COL9A3-209ENST00000469852 VSIG10L2P0DP72 767 aa11.77□□□□□ -0.53
COL9A3-209ENST00000469852 PIGPP57054 158 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms