RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CSMD1Q96PZ7 3565 aa15.9■□□□□ 0.14
VIM-203ENST00000469543 TLN1Q9Y490 2541 aaKnown RBP15.89■□□□□ 0.13
VIM-203ENST00000469543 ZNF737O75373 536 aa15.89■□□□□ 0.13
VIM-203ENST00000469543 ACAA1P09110 424 aaPredicted RBP15.89■□□□□ 0.13
VIM-203ENST00000469543 CD200P41217 278 aa15.89■□□□□ 0.13
VIM-203ENST00000469543 RHEBQ15382 184 aa15.89■□□□□ 0.13
VIM-203ENST00000469543 ZNF506Q5JVG8 444 aa15.89■□□□□ 0.13
VIM-203ENST00000469543 ZADH2Q8N4Q0 377 aa15.89■□□□□ 0.13
VIM-203ENST00000469543 C1orf162Q8NEQ5 155 aaPredicted RBP15.89■□□□□ 0.13
VIM-203ENST00000469543 HSPB7Q9UBY9 170 aa15.89■□□□□ 0.13
VIM-203ENST00000469543 P0C879 139 aa15.89■□□□□ 0.13
VIM-203ENST00000469543 HBG1P69891 147 aa15.89■□□□□ 0.13
VIM-203ENST00000469543 HBG2P69892 147 aa15.89■□□□□ 0.13
VIM-203ENST00000469543 FAM27E3Q08E93 113 aa15.89■□□□□ 0.13
VIM-203ENST00000469543 TAF15Q92804 592 aaKnown RBP eCLIP15.89■□□□□ 0.13
VIM-203ENST00000469543 FOLR2P14207 255 aa15.88■□□□□ 0.13
VIM-203ENST00000469543 HOXB1P14653 301 aaPredicted RBP15.88■□□□□ 0.13
VIM-203ENST00000469543 AGAP20933 346 aa15.88■□□□□ 0.13
VIM-203ENST00000469543 MBNL2Q5VZF2 373 aaKnown RBP15.88■□□□□ 0.13
VIM-203ENST00000469543 TMEM14EPQ6UXP3 125 aa15.88■□□□□ 0.13
VIM-203ENST00000469543 GNG12Q9UBI6 72 aa15.88■□□□□ 0.13
VIM-203ENST00000469543 YLPM1P49750 1951 aaKnown RBP15.88■□□□□ 0.13
VIM-203ENST00000469543 BTBD17A6NE02 478 aa15.88■□□□□ 0.13
VIM-203ENST00000469543 RNF212BA8MTL3 300 aa15.88■□□□□ 0.13
VIM-203ENST00000469543 ERVFRD-1P60508 538 aa15.88■□□□□ 0.13
VIM-203ENST00000469543 ACSM6Q6P461 480 aa15.88■□□□□ 0.13
VIM-203ENST00000469543 DEFB108BQ8NET1 73 aa15.88■□□□□ 0.13
VIM-203ENST00000469543 MARCH11A6NNE9 402 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 FCGR3BO75015 233 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 CXCL1P09341 107 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 TFF3Q07654 80 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 H2BFWTQ7Z2G1 175 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 PRR7Q8TB68 274 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 GATAD1Q8WUU5 269 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 TUBA4BQ9H853 241 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.87■□□□□ 0.13
VIM-203ENST00000469543 TNCP24821 2201 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 LOC102723971A0A1B0GUV8 181 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 HSPB1P04792 205 aaKnown RBP15.87■□□□□ 0.13
VIM-203ENST00000469543 S100A6P06703 90 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 NQO2P16083 231 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 PAX6P26367 422 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 P2RY6Q15077 328 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 DTD1Q8TEA8 209 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 QTRT1Q9BXR0 403 aaKnown RBP15.87■□□□□ 0.13
VIM-203ENST00000469543 DCHS2Q6V1P9 2916 aa15.87■□□□□ 0.13
VIM-203ENST00000469543 C5orf52A6NGY3 159 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 OR9G9P0C7N8 305 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 FABP9Q0Z7S8 132 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 MUCL1Q96DR8 90 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 SLC25A22Q9H936 323 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 SPTA1P02549 2419 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 SLC31A2O15432 143 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 PPIHO43447 177 aaKnown RBP15.86■□□□□ 0.13
VIM-203ENST00000469543 RPS10P46783 165 aaKnown RBP15.86■□□□□ 0.13
VIM-203ENST00000469543 ZNF561Q8N587 486 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 Q8WTZ3 238 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 YPEL4Q96NS1 127 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 NIPSNAP3BQ9BS92 247 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 DCAF16Q9NXF7 216 aa15.86■□□□□ 0.13
VIM-203ENST00000469543 TPRP12270 2363 aaKnown RBP15.85■□□□□ 0.13
VIM-203ENST00000469543 TGIF2-C20orf24A0A0A6YYL0 155 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 TRAV3A0A0B4J244 114 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 MBD3L4A6NDZ8 208 aaPredicted RBP15.85■□□□□ 0.13
VIM-203ENST00000469543 MBD3L3A6NE82 208 aaPredicted RBP15.85■□□□□ 0.13
VIM-203ENST00000469543 MBD3L5A6NJ08 208 aaPredicted RBP15.85■□□□□ 0.13
VIM-203ENST00000469543 PMS2P5A8MQ11 134 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 BMP5P22003 454 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 CATR1Q13166 79 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 FAM90A2PQ658T7 463 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 ZCCHC24Q8N2G6 241 aaKnown RBP15.85■□□□□ 0.13
VIM-203ENST00000469543 MBD3L2Q8NHZ7 208 aaPredicted RBP15.85■□□□□ 0.13
VIM-203ENST00000469543 Q8TCH9 128 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 SNRNP40Q96DI7 357 aaKnown RBP15.85■□□□□ 0.13
VIM-203ENST00000469543 CEBPZOSA8MTT3 80 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 SRRM5B3KS81 715 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 SPINT2O43291 252 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 CEACAM4O75871 244 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 RNF212Q495C1 297 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 MORN2Q502X0 79 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 SLC16A13Q7RTY0 426 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 ITLN1Q8WWA0 313 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 LURAP1Q96LR2 239 aa15.85■□□□□ 0.13
VIM-203ENST00000469543 MAP1LC3B2A6NCE7 125 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 IFNL4K9M1U5 179 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 BCL2P10415 239 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 KHDC3LQ587J8 217 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 MAP1LC3BQ9GZQ8 125 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 SMDT1Q9H4I9 107 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 KLK10O43240 276 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 CLDN14O95500 239 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 HBE1P02100 147 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 ELOBQ15370 118 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 MSMO1Q15800 293 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 GCSAMLQ5JQS6 135 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 HEPN1Q6WQI6 88 aa15.84■□□□□ 0.13
VIM-203ENST00000469543 CRYAAP02489 173 aa15.83■□□□□ 0.13
VIM-203ENST00000469543 DUTP33316 252 aaKnown RBP15.83■□□□□ 0.13
VIM-203ENST00000469543 GPR12P47775 334 aa15.83■□□□□ 0.13
VIM-203ENST00000469543 NCMAPQ5T1S8 102 aa15.83■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms