RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 DERL3Q96Q80 235 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 HSD17B10Q99714 261 aaKnown RBP4□□□□□ -1.77
CCDC88A-209ENST00000456975 OR2H1Q9GZK4 316 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 NPFFR1Q9GZQ6 430 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 AAMDCQ9H7C9 122 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 SH2D2AQ9NP31 389 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 ACOT13Q9NPJ3 140 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 SLC52A3Q9NQ40 469 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 PRTFDC1Q9NRG1 225 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 SIGLEC8Q9NYZ4 499 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 DKK2Q9UBU2 259 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 LSM7Q9UK45 103 aaKnown RBP4□□□□□ -1.77
CCDC88A-209ENST00000456975 CES1P1Q9UKY3 287 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 TPRKBQ9Y3C4 175 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 ORC6Q9Y5N6 252 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 GCN1Q92616 2671 aaKnown RBP4□□□□□ -1.77
CCDC88A-209ENST00000456975 SPEGQ15772 3267 aa4□□□□□ -1.77
CCDC88A-209ENST00000456975 IGLC7A0M8Q6 106 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 CEACAM18A8MTB9 384 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 CRLF1O75462 422 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 CSN2P05814 226 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 IGF2RP11717 2491 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 CPMP14384 443 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 AADACP22760 399 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 CDK2P24941 298 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 SNCAP37840 140 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 PGFP49763 221 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 GPM6AP51674 278 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 HNRNPA3P51991 378 aaKnown RBP3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 PSG9Q00887 426 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 TGFBR3Q03167 851 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 CD164Q04900 197 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 SLC10A2Q12908 348 aaPredicted RBP3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 TAF10Q12962 218 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 GINS1Q14691 196 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 RAB6CQ53S08 254 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 PARM1Q6UWI2 310 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM231DQ6ZW35 169 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 IQCF1Q8N6M8 205 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF548Q8NEK5 533 aaPredicted RBP3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 OR2T33Q8NG76 320 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 OR5A1Q8NGJ0 315 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 OR1J4Q8NGS1 313 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 OLIG1Q8TAK6 271 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 Q8TCH9 128 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 DOK4Q8TEW6 326 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 RND1Q92730 232 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 HIST1H2ACQ93077 130 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 PNPLA2Q96AD5 504 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 GABRG3Q99928 467 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 RPP25Q9BUL9 199 aaKnown RBP3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 PLA2G2FQ9BZM2 168 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 RAB6CQ9H0N0 254 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 DUSP21Q9H596 190 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF703Q9H7S9 590 aaPredicted RBP3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 MOB1AQ9H8S9 216 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 ELL3Q9HB65 397 aaPredicted RBP3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 KLHL13Q9P2N7 655 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 INSIG2Q9Y5U4 225 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 ASPMQ8IZT6 3477 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF816-ZNF321PA0A0X1KG74 233 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 H3BMH7 237 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 SYNGR1O43759 233 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 RPL13AP40429 203 aaKnown RBP3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 FOLR3P41439 243 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 SSR4P51571 173 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 IL10RBQ08334 325 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM27E3Q08E93 113 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 PMVKQ15126 192 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 PYDC2Q56P42 97 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 STPG1Q5TH74 334 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 TEX36Q5VZQ5 186 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 C19orf48Q6RUI8 117 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 TTC9CQ8N5M4 171 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 KRTCAP2Q8N6L1 136 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 TMED6Q8WW62 240 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 FGF14Q92915 247 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF681Q96N22 645 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 OR4C12Q96R67 309 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 OR4K3Q96R72 315 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 VAMP8Q9BV40 100 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 DPY30Q9C005 99 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 VDAC3Q9Y277 283 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 DENND4CQ5VZ89 1909 aa3.99□□□□□ -1.77
CCDC88A-209ENST00000456975 A0A096LPK6 155 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 TRAV24A0A0B4J272 114 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM236DA0A1B0GTK5 79 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 DAPL1A0PJW8 107 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 C7orf71A4D174 169 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM231BA6NCW3 169 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 OR2T8A6NH00 312 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF705FA8MVS1 300 aaPredicted RBP3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 H0YJW9 148 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 H7C1C5 153 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 TRAF3IP2O43734 574 aaPredicted RBP3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 YPEL1O60688 119 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 OR2A4O95047 310 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 C1orf105O95561 183 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 IGF1P05019 195 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF705DP0CH99 300 aaPredicted RBP3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms