RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 SOX15O60248 233 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 SCGNO76038 276 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 OR8U9P0C7N5 309 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 RAB25P57735 213 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 LINC00205P59089 165 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 ECSCRQ19T08 205 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 KCTD21Q4G0X4 260 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 SFXN4Q6P4A7 337 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 ZNF562Q6V9R5 426 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 OR11H1Q8NG94 326 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 MAFIPQ8WZ33 124 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 ATG5Q9H1Y0 275 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 GNB4Q9HAV0 340 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 SDHAF2Q9NX18 166 aa9.36□□□□□ -0.91
USP40-210ENST00000454354 METTL1Q9UBP6 276 aaKnown RBP9.36□□□□□ -0.91
USP40-210ENST00000454354 ZMAT5Q9UDW3 170 aaKnown RBP9.36□□□□□ -0.91
USP40-210ENST00000454354 ZNF230Q9UIE0 474 aaPredicted RBP9.36□□□□□ -0.91
USP40-210ENST00000454354 ELF5Q9UKW6 265 aaPredicted RBP9.36□□□□□ -0.91
USP40-210ENST00000454354 FOXA2Q9Y261 457 aaPredicted RBP9.36□□□□□ -0.91
USP40-210ENST00000454354 IGKV1D-8A0A087WSZ0 117 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 A0A1W2PN81 502 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 CA2P00918 260 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 IGLV2-23P01705 113 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 OR8U8P0C7N1 319 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 CHRNA7P36544 502 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 TALDO1P37837 337 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 SCAND1P57086 179 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 RPS16P62249 146 aaKnown RBP9.35□□□□□ -0.91
USP40-210ENST00000454354 TAGLNQ01995 201 aaKnown RBP9.35□□□□□ -0.91
USP40-210ENST00000454354 TMEM267Q0VDI3 215 aaPredicted RBP9.35□□□□□ -0.91
USP40-210ENST00000454354 ARFRP1Q13795 201 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 CDNFQ49AH0 187 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 AKIRIN2Q53H80 203 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 C9orf66Q5T8R8 295 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 ASPHD1Q5U4P2 390 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 HACD4Q5VWC8 232 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 PYHIN1Q6K0P9 492 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 H1FOOQ8IZA3 346 aaPredicted RBP9.35□□□□□ -0.91
USP40-210ENST00000454354 FLYWCH2Q96CP2 140 aaKnown RBP9.35□□□□□ -0.91
USP40-210ENST00000454354 GINS4Q9BRT9 223 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 OR51E2Q9H255 320 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 SLC35D1Q9NTN3 355 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 DAPK2Q9UIK4 370 aa9.35□□□□□ -0.91
USP40-210ENST00000454354 TENM3Q9P273 2699 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 RAMP3O60896 148 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 CRYGBP07316 175 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 SNRPBP14678 240 aaKnown RBP9.34□□□□□ -0.91
USP40-210ENST00000454354 SDC2P34741 201 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 LGALS7P47929 136 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 LUMP51884 338 aaPredicted RBP9.34□□□□□ -0.91
USP40-210ENST00000454354 GNB1P62873 340 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 SSBP2P81877 361 aaPredicted RBP9.34□□□□□ -0.91
USP40-210ENST00000454354 DGCR2P98153 550 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 ZNF616Q08AN1 781 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 TMEM177Q53S58 311 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 PPP1R27Q86WC6 154 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 OR1N2Q8NGR9 330 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 LGALS14Q8TCE9 139 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 DDB2Q92466 427 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 ARPC1AQ92747 370 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 CLCC1Q96S66 551 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 FAM103A1Q9BTL3 118 aaKnown RBP9.34□□□□□ -0.91
USP40-210ENST00000454354 DCSTAMPQ9H295 470 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 TPSG1Q9NRR2 321 aa9.34□□□□□ -0.91
USP40-210ENST00000454354 RRP15Q9Y3B9 282 aaKnown RBP9.34□□□□□ -0.91
USP40-210ENST00000454354 TMEM235A6NFC5 223 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 SEC14L6B5MCN3 397 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 ARPC1BO15143 372 aaKnown RBP9.33□□□□□ -0.92
USP40-210ENST00000454354 SLC25A17O43808 307 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 LGALS1P09382 135 aaKnown RBP9.33□□□□□ -0.92
USP40-210ENST00000454354 RRASP10301 218 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 DUTP33316 252 aaKnown RBP9.33□□□□□ -0.92
USP40-210ENST00000454354 PITPNAQ00169 270 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 DCTN2Q13561 401 aaKnown RBP9.33□□□□□ -0.92
USP40-210ENST00000454354 ZNF260Q3ZCT1 412 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 ACTBL2Q562R1 376 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 UNQ5815/PRO19632Q6UWF5 114 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 LFNGQ8NES3 379 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 ABHD5Q8WTS1 349 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 NUDCD2Q8WVJ2 157 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 ADTRPQ96IZ2 230 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 HARBI1Q96MB7 349 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 SLA2Q9H6Q3 261 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 RNF167Q9H6Y7 350 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 RHBDL2Q9NX52 303 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 SCOCQ9UIL1 159 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 A3GALT2U3KPV4 340 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 STAB2Q8WWQ8 2551 aa9.33□□□□□ -0.92
USP40-210ENST00000454354 H3BUA1 57 aa9.32□□□□□ -0.92
USP40-210ENST00000454354 SSX5O60225 188 aa9.32□□□□□ -0.92
USP40-210ENST00000454354 TMEM127O75204 238 aa9.32□□□□□ -0.92
USP40-210ENST00000454354 CTXN2P0C2S0 81 aa9.32□□□□□ -0.92
USP40-210ENST00000454354 CLEC2LP0C7M8 214 aa9.32□□□□□ -0.92
USP40-210ENST00000454354 CD36P16671 472 aa9.32□□□□□ -0.92
USP40-210ENST00000454354 CBX3Q13185 183 aa9.32□□□□□ -0.92
USP40-210ENST00000454354 NEDD8Q15843 81 aa9.32□□□□□ -0.92
USP40-210ENST00000454354 RTL8BQ17RB0 113 aa9.32□□□□□ -0.92
USP40-210ENST00000454354 ZNF645Q8N7E2 425 aa9.32□□□□□ -0.92
USP40-210ENST00000454354 BVESQ8NE79 360 aa9.32□□□□□ -0.92
USP40-210ENST00000454354 SLC25A38Q96DW6 304 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms