RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 FLYWCH2Q96CP2 140 aaKnown RBP9.97□□□□□ -0.81
PRPF40A-203ENST00000448428 FUNDC2Q9BWH2 189 aa9.97□□□□□ -0.81
PRPF40A-203ENST00000448428 PARP11Q9NR21 331 aa9.97□□□□□ -0.81
PRPF40A-203ENST00000448428 DIABLOQ9NR28 239 aa9.97□□□□□ -0.81
PRPF40A-203ENST00000448428 SLC35D1Q9NTN3 355 aa9.97□□□□□ -0.81
PRPF40A-203ENST00000448428 METTL1Q9UBP6 276 aaKnown RBP9.97□□□□□ -0.81
PRPF40A-203ENST00000448428 FBXO7Q9Y3I1 522 aa9.97□□□□□ -0.81
PRPF40A-203ENST00000448428 TRAV41A0A0B4J266 112 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 J3QRK9 145 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 OR5H8P0DN80 308 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 EGR2P11161 476 aaPredicted RBP9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 PTHLHP12272 177 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 NFYAP23511 347 aaPredicted RBP9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 PSMB8P28062 276 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 SLC6A1P30531 599 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 CDX1P47902 265 aaPredicted RBP9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 NDPQ00604 133 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 ZNF660Q6AZW8 331 aaPredicted RBP9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 MRPL41Q8IXM3 137 aaKnown RBP9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 GVQW1Q8N7I0 195 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 LINC00482Q8N8I6 264 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 CLCC1Q96S66 551 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 TSNAXQ99598 290 aaKnown RBP9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 KLK15Q9H2R5 256 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 AUNIPQ9H7T9 357 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 ANXA10Q9UJ72 324 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 OR2W1Q9Y3N9 320 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 NUBP2Q9Y5Y2 271 aa9.96□□□□□ -0.82
PRPF40A-203ENST00000448428 NOTCH1P46531 2555 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 XRCC3O43542 346 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 IGLV1-40P01703 118 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 IGLV2-23P01705 113 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 HLA-DQB1P01920 261 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 PRB2P02812 416 aaPredicted RBP9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 SMIM18P0DKX4 95 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 MYCNOSP40205 109 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 VBP1P61758 197 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 NCS1P62166 190 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 TAGLNQ01995 201 aaKnown RBP9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 KIAA0141Q14154 515 aaPredicted RBP9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 C19orf54Q5BKX5 351 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 MINDY2Q8NBR6 621 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 BVESQ8NE79 360 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 OR13F1Q8NGS4 319 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 S100A16Q96FQ6 103 aaKnown RBP9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 RAX2Q96IS3 184 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 DUX3Q96PT4 197 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 P2RX4Q99571 388 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 NOTCH3Q9UM47 2321 aa9.95□□□□□ -0.82
PRPF40A-203ENST00000448428 IGKV1D-13A0A0B4J2D9 117 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 SRRM4A7MD48 611 aaKnown RBP9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 LINC00473A8K010 186 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 CCL24O00175 119 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 SLC25A17O43808 307 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 SPDEFO95238 335 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 CRYGBP07316 175 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 IGKV1-13P0DP09 117 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 DUTP33316 252 aaKnown RBP9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 LGALS7P47929 136 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 LUMP51884 338 aaPredicted RBP9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 CRIP2P52943 208 aaPredicted RBP9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 DEFB136Q30KP8 78 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 TMEM177Q53S58 311 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 UBE2NLQ5JXB2 153 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 FOXB2Q5VYV0 432 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 TMEM65Q6PI78 240 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 ZNF562Q6V9R5 426 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 HOGA1Q86XE5 327 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 SAMD12Q8N8I0 201 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 BEST4Q8NFU0 473 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 MYOZ3Q8TDC0 251 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 DDB2Q92466 427 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 SLC25A46Q96AG3 418 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 RCC1LQ96I51 464 aaKnown RBP9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 TPSG1Q9NRR2 321 aa9.94□□□□□ -0.82
PRPF40A-203ENST00000448428 ARPC1BO15143 372 aaKnown RBP9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 SOX15O60248 233 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 TUSC2O75896 110 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 CA2P00918 260 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 IGLV2-14P01704 120 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 FCER2P06734 321 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 RRASP10301 218 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 RAB9AP51151 201 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 PJVKQ0ZLH3 352 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 RTL8BQ17RB0 113 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 ECSCRQ19T08 205 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 PPP1R27Q86WC6 154 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 ZNF645Q8N7E2 425 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 ZNF491Q8N8L2 437 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 ABHD5Q8WTS1 349 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 ADTRPQ96IZ2 230 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 FAM103A1Q9BTL3 118 aaKnown RBP9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 NAA50Q9GZZ1 169 aaKnown RBP9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 A3GALT2U3KPV4 340 aa9.93□□□□□ -0.82
PRPF40A-203ENST00000448428 A0A1W2PN81 502 aa9.92□□□□□ -0.82
PRPF40A-203ENST00000448428 MEIS3P1A6NDR6 274 aa9.92□□□□□ -0.82
PRPF40A-203ENST00000448428 SHOXO15266 292 aa9.92□□□□□ -0.82
PRPF40A-203ENST00000448428 CHRNA7P36544 502 aa9.92□□□□□ -0.82
PRPF40A-203ENST00000448428 ARPC4P59998 168 aa9.92□□□□□ -0.82
PRPF40A-203ENST00000448428 SSBP2P81877 361 aaPredicted RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms