RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 HSD17B10Q99714 261 aaKnown RBP13.34□□□□□ -0.27
SHQ1-202ENST00000444040 SEBOXQ9HB31 216 aaPredicted RBP13.34□□□□□ -0.27
SHQ1-202ENST00000444040 LAMP3Q9UQV4 416 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 IGKV1D-17A0A075B6S4 117 aa13.33□□□□□ -0.28
SHQ1-202ENST00000444040 ACSM6Q6P461 480 aa13.33□□□□□ -0.28
SHQ1-202ENST00000444040 TRAT1Q6PIZ9 186 aa13.33□□□□□ -0.28
SHQ1-202ENST00000444040 H2BFWTQ7Z2G1 175 aa13.33□□□□□ -0.28
SHQ1-202ENST00000444040 LRP11Q86VZ4 500 aa13.33□□□□□ -0.28
SHQ1-202ENST00000444040 TMEM147Q9BVK8 224 aa13.33□□□□□ -0.28
SHQ1-202ENST00000444040 VAX2Q9UIW0 290 aa13.33□□□□□ -0.28
SHQ1-202ENST00000444040 B4DEV8 164 aa13.33□□□□□ -0.28
SHQ1-202ENST00000444040 SPINT2O43291 252 aa13.33□□□□□ -0.28
SHQ1-202ENST00000444040 RPS10P46783 165 aaKnown RBP13.33□□□□□ -0.28
SHQ1-202ENST00000444040 IGF2-ASQ6U949 168 aa13.33□□□□□ -0.28
SHQ1-202ENST00000444040 USF3Q68DE3 2245 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 AP4M1O00189 453 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 NQO2P16083 231 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 MZT1Q08AG7 82 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 EDDM3AQ14507 147 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 BEND4Q6ZU67 534 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 CACNA1HO95180 2353 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 MARCH11A6NNE9 402 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 PNRC1Q12796 327 aaPredicted RBP13.32□□□□□ -0.28
SHQ1-202ENST00000444040 HNF4GQ14541 408 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 NCR3LG1Q68D85 454 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 OR10P1Q8NGE3 313 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 SLC39A9Q9NUM3 307 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 URGCP-MRPS24S4R325 110 aa13.32□□□□□ -0.28
SHQ1-202ENST00000444040 CFHR2P36980 270 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 VWC2Q2TAL6 325 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 CR1LQ2VPA4 569 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 GCSAMQ8N6F7 178 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 LHX4Q969G2 390 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 CIB3Q96Q77 187 aaPredicted RBP13.31□□□□□ -0.28
SHQ1-202ENST00000444040 SDF2L1Q9HCN8 221 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 CACNA1DQ01668 2161 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 CHD3Q12873 2000 aaKnown RBP13.31□□□□□ -0.28
SHQ1-202ENST00000444040 CEBPZOSA8MTT3 80 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 SMIM6P0DI80 62 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 DUTP33316 252 aaKnown RBP13.31□□□□□ -0.28
SHQ1-202ENST00000444040 SPRNQ5BIV9 151 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 FAM90A1Q86YD7 464 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 DUSP13Q9UII6 198 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 CFAP47Q6ZTR5 3102 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 OTOGLQ3ZCN5 2332 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 GZMHP20718 246 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 MDKP21741 143 aaPredicted RBP13.31□□□□□ -0.28
SHQ1-202ENST00000444040 LTC4SQ16873 150 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 MORN2Q502X0 79 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 EDARADDQ8WWZ3 215 aa13.31□□□□□ -0.28
SHQ1-202ENST00000444040 INTS1Q8N201 2190 aaKnown RBP13.3□□□□□ -0.28
SHQ1-202ENST00000444040 DIDO1Q9BTC0 2240 aaKnown RBP13.3□□□□□ -0.28
SHQ1-202ENST00000444040 TGIF2-C20orf24A0A0A6YYL0 155 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 CD81P60033 236 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 RPS16P62249 146 aaKnown RBP13.3□□□□□ -0.28
SHQ1-202ENST00000444040 SPINK9Q5DT21 86 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 ZNF474Q6S9Z5 364 aaPredicted RBP13.3□□□□□ -0.28
SHQ1-202ENST00000444040 TMEM242Q9NWH2 141 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 WASF3Q9UPY6 502 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 PTPRBP23467 1997 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 IFNA1P01562 189 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 IGHV3-13P01766 116 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 OR9G9P0C7N8 305 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 FGF7P21781 194 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 ZNF83P51522 516 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 GNB2P62879 340 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 TFF3Q07654 80 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 AARDQ4LEZ3 155 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 WDR25Q64LD2 544 aaPredicted RBP13.3□□□□□ -0.28
SHQ1-202ENST00000444040 FAM180AQ6UWF9 173 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 SLC16A13Q7RTY0 426 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 ZADH2Q8N4Q0 377 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 R3HDM4Q96D70 268 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 SNX22Q96L94 193 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 JPT1Q9UK76 154 aa13.3□□□□□ -0.28
SHQ1-202ENST00000444040 MGST3O14880 152 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 RBMXL2O75526 392 aaKnown RBP13.29□□□□□ -0.28
SHQ1-202ENST00000444040 GPR12P47775 334 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 PLPPR2Q96GM1 343 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 QTRT1Q9BXR0 403 aaKnown RBP13.29□□□□□ -0.28
SHQ1-202ENST00000444040 CTXND1A0A1B0GTU2 59 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 YPEL1O60688 119 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 CYB5R3P00387 301 aaPredicted RBP13.29□□□□□ -0.28
SHQ1-202ENST00000444040 RND2P52198 227 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 LOXL3P58215 753 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 S100A12P80511 92 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 NANPQ8TBE9 248 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 S100PBPQ96BU1 408 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 YPEL2Q96QA6 119 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 OR2V2Q96R30 315 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 NPCDR1Q9BY65 106 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 TMPRSS5Q9H3S3 457 aa13.29□□□□□ -0.28
SHQ1-202ENST00000444040 IGHV3OR15-7A0A075B7D8 119 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 C15orf62A8K5M9 175 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 KIAA0141Q14154 515 aaPredicted RBP13.28□□□□□ -0.28
SHQ1-202ENST00000444040 TIMM23BQ5SRD1 257 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 RPRMLQ8N4K4 120 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 OR10G9Q8NGN4 311 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 OR10G7Q8NGN6 311 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 SLC25A22Q9H936 323 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms