RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 C12orf77C9JDV5 145 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 NDUFS8O00217 210 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 CLDN14O95500 239 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 GRPP07492 148 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 ZNF25P17030 456 aaPredicted RBP9.49□□□□□ -0.89
USP4-205ENST00000431357 TUBG1P23258 451 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 IDH3GP51553 393 aaPredicted RBP9.49□□□□□ -0.89
USP4-205ENST00000431357 PSG7Q13046 419 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 ZNF66Q6ZN08 573 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 TMEM178AQ8NBL3 297 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 OR10A7Q8NGE5 316 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 OR10D4PQ8NGN7 298 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 PYGO2Q9BRQ0 406 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 ARRDC1-AS1Q9H2J1 176 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 SRD5A3Q9H8P0 318 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 TUBG2Q9NRH3 451 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 SPRR3Q9UBC9 169 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 PITPNC1Q9UKF7 332 aa9.49□□□□□ -0.89
USP4-205ENST00000431357 OR5H1A6NKK0 313 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 PMS2P5A8MQ11 134 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 C17orf112F2Z3M2 114 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 SOX15O60248 233 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 KRASP01116 189 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 SOD3P08294 240 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 CELA3BP08861 270 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 COX5AP20674 150 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 FGF7P21781 194 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 HOXC12P31275 282 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 G6PCP35575 357 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 MRPS11P82912 194 aaKnown RBP9.48□□□□□ -0.89
USP4-205ENST00000431357 GAMTQ14353 236 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 VWC2Q2TAL6 325 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 BSXQ3C1V8 233 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 TGIF2LYQ8IUE0 185 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 ZNF709Q8N972 641 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 WDR31Q8NA23 367 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 OR10G9Q8NGN4 311 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 OR10G7Q8NGN6 311 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 CXXC4Q9H2H0 198 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 ZDHHC11Q9H8X9 412 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 OBP2BQ9NPH6 170 aa9.48□□□□□ -0.89
USP4-205ENST00000431357 A0A1W2PPQ1 181 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 PHOX2AO14813 284 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 PSPNO60542 156 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 RAMP3O60896 148 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 IGKV1D-33P01593 117 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 IGKV1-33P01594 117 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 HBZP02008 142 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 IGHV1-2P23083 117 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 ERVS71-1P61550 626 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 GNB2P62879 340 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 RPL30P62888 115 aaKnown RBP9.47□□□□□ -0.89
USP4-205ENST00000431357 ZNF816Q0VGE8 651 aaPredicted RBP9.47□□□□□ -0.89
USP4-205ENST00000431357 ADIRFQ15847 76 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 ALKBH6Q3KRA9 238 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 ACSM6Q6P461 480 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 TRAT1Q6PIZ9 186 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 FAM180AQ6UWF9 173 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 MYPOPQ86VE0 399 aaPredicted RBP9.47□□□□□ -0.89
USP4-205ENST00000431357 OR52L2PQ8NGH6 319 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 OR5B12Q96R08 314 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 GSX1Q9H4S2 264 aaPredicted RBP9.47□□□□□ -0.89
USP4-205ENST00000431357 IL17BQ9UHF5 180 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 WDR87Q6ZQQ6 2873 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 IFNL4K9M1U5 179 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 S1PR2O95136 353 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 TNFSF15O95150 251 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 PFN1P07737 140 aaKnown RBP9.47□□□□□ -0.89
USP4-205ENST00000431357 H2BFWTQ7Z2G1 175 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 KLF14Q8TD94 323 aaPredicted RBP9.47□□□□□ -0.89
USP4-205ENST00000431357 C22orf15Q8WYQ4 148 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 ANAPC16Q96DE5 110 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 HSD17B10Q99714 261 aaKnown RBP9.47□□□□□ -0.89
USP4-205ENST00000431357 TMEM208Q9BTX3 173 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 CLN8Q9UBY8 286 aa9.47□□□□□ -0.89
USP4-205ENST00000431357 SMCO3A2RU48 225 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 A6NJY4 79 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 M0R143 59 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 RPL23P62829 140 aaKnown RBP9.46□□□□□ -0.89
USP4-205ENST00000431357 ARG2P78540 354 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 MAJINQ3KP22 176 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 FFAR4Q5NUL3 377 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 CLEC2AQ6UVW9 174 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 C16orf54Q6UWD8 224 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 ACP7Q6ZNF0 438 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 C16orf82Q7Z2V1 217 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 VASH2Q86V25 355 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 ZNF808Q8N4W9 903 aaPredicted RBP9.46□□□□□ -0.89
USP4-205ENST00000431357 FAM216AQ8WUB2 273 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 C5orf30Q96GV9 206 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 PARD6AQ9NPB6 346 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 R4GN57 208 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 ESPL1Q14674 2120 aa9.46□□□□□ -0.89
USP4-205ENST00000431357 ZNF407Q9C0G0 2248 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 A0A1W2PN81 502 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 C17orf98A8MV24 154 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 H7BYZ3 331 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 ZG16O60844 167 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 VENTXO95231 258 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 CD59P13987 128 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms